RNA id: XM_026912592.2


Basic Information

Item Value
RNA id XM_026912592.2
length 2056
RNA type mRNA
GC content 0.45
exon number 12
gene id casp10
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18068228 ~ 18076322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gactcttttttatttaaagttgatttctttttatttaaaattgtcttctttttatttaaagttgactcttttttattttttcagttatttattgtTCCGCTGCCTTGACCTTCTGGGCCACCGTACACTACTCTCCTCCTTCTGAAGTCCTTCTAGTTTCATTTTTACTGGGGAAAGTTGCAGAGTCATGAGTGAGTCAGAATCAGTCATTTTTCTTCTGAATGTGGCGACAGTTGCGGGGTTTAAAGCCGCTTAAAACATGAAGACAGCCGAGACTCGTCCTcctgattagattagattagattagagctGAGCGGAGAGAGATCTTCCACCATGGAGGAGAAGGTGCTAGAGTTCCAGGAAATTCTGGTGCAGGTTCAGGACTCCTTGAGCCAGACTGAGGTGCTGGATCTCGTGTTCCTCTGCTCTGATATGCTCAGGAAGGATCTCAGCAGTGTGGTCACAGCCAGAGATCTGTTTTCTCTGCTGCAGAATCATGACCTGCTATCTTCTGAAGATAGGTCTCTGCTTGTTGAGCTGCTGAAGATCATCAAACGTGATAAACTTATTCGAGACCTGCAATTGAATCCACAACTCTCAGGAAGTCGTGTCTCCCCCTACAGGCAGATGCTATTTGATTTATCAGAGAACATCTCAGAAGATGAACTAAAGACTATTAAATTTGTGCTGGGCAAGACTTTACCCCGCAAGAAACTACAGCAAGATGTGACAATACTGCAGTTGTTTATGGAACTGGAGAAGGGAGGCTGCATGGGTGCTGATAACCTTGGCACTATAGAAAGAATCATTGGATTTGTATGCCctcatttaaagaaaacaatcagTTCGTATCAAATGGAGACCGGTGCTAGTGTTCATGAAGAAGTGAAATGGAGGGACAAGTCTGATTCTCAGGACGTCTCAGTAACCACCAGACCAATTCTGCCTGAGGACATTGTAGGGGCTACATACAACCAAGATTTGGTGTCTACTGAAGAGCTGCTGCCCCCCTCATATTTTAGTCAGCCACAGTCCACAGAGGTGCGTTCCTTGCAGACATCTTTCTCGGGTGATGCTGTAGAGGCACAGATTGCTCGCTTGAATCTTTCTGAAACTCAAAACCTCGCCCAAGGTGACAAGAACCTGAGCTTTCCTGAGCCTAACCAAAATAACACACCGAAGCTGGAGCAATATGACATGAGTGGAGATTGGAGAGGAATCGCCTTGATCATCAACAACTATGATTTTTCAAATTATCCACGGCTGAAGAACAGAGAGGGGACGGACGTAGATGAGAagAGTTTAGTTGCTGTGTTCAAGTGGCTGGGGTTTGAAACCATGACAAAGCAGGACTGCAGTAGGGAGGACATGCTGAGTGCTCTGAATGCGCTGTGCAAGCGAGATCACACTCAGGCCGACTGTgtggtgtgctgtgtgctgaCTCATGGCTATGAGAGGGGTCTGTATGGGGTGGATGGAGGGAAAGTCTCGCTAAGGGAGCTGATGGAGCTGCTGGATGGCCACCGTTGCCCCTCCCTCAACCGAAAGCCCAAACTCTTCTTCATCCAAGCCTGTCAGGGCTTGCAGGAGCAGCAGGTGGTCTTCCTTCAGTCGGATGGTTCTACAAACACCTCAGACATGgagatgggttttttttgtgatgctGAAGTGCCCAAAGAGTCCATACCTGCAGGGGCTGACTACCTAGTGGCGATGGCGACGGTGCCAGGCTATGTCTCATTCAGAGAGAAATTTAGAGGAACCTGGTTCATACAGTCATTGTGTAAGAACCTACAAAAGCTTGTGCCAAGTGGTATTGATCTGCTGTCCATCCTGACTGAAGTGAACAAAGAAGTTAGCAAGAAGGCTGACAAAACTGGAACCAGAAAGCAGATGCCACAGCCAGAATTCACACTGACTAAGAGAGTAGTGTTCCCAATACCAAAAACCCCTATGCCCTCTTAATCATCGTTTAACTGACATTTCATCTGGATTGCTACAAGGTCTTAACCTTGaggaactgtttttaaaattgccatatttttatgtgtatata

Function

GO: NA

KEGG:

id description
K04400 CASP10; caspase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100258 lncRNA downstream 234639 17833375 ~ 17833589 (-) True G84411
TU100243 lncRNA downstream 324203 17740639 ~ 17744025 (-) True LOC117597384
XR_004578231.1 lncRNA downstream 324208 17740637 ~ 17744020 (-) False LOC117597384
TU100224 lncRNA downstream 340231 17726653 ~ 17727997 (-) True G84394
TU100221 lncRNA downstream 371142 17695290 ~ 17697086 (-) False evx2
TU100815 lncRNA upstream 55088 18131410 ~ 18131998 (-) True G84881
TU100814 lncRNA upstream 57080 18133402 ~ 18133689 (-) True G84880
TU100816 lncRNA upstream 58514 18134836 ~ 18135614 (-) True G84882
TU100817 lncRNA upstream 59347 18135669 ~ 18137083 (-) True G84883
TU100942 lncRNA upstream 464031 18540353 ~ 18555865 (-) True G84975
XM_026946559.2 mRNA downstream 5959 18054788 ~ 18062269 (-) False prkra
XM_026946551.2 mRNA downstream 6005 18054788 ~ 18062223 (-) True prkra
XM_026911925.2 mRNA downstream 76717 17937053 ~ 17991511 (-) False pde11a
XM_026911916.2 mRNA downstream 76719 17937053 ~ 17991509 (-) True pde11a
XM_034304176.1 mRNA downstream 171295 17882201 ~ 17896933 (-) False nfe2l2a
XM_026913233.2 mRNA upstream 5793 18082115 ~ 18084871 (-) True LOC113526302
XM_034304710.1 mRNA upstream 12301 18088623 ~ 18114405 (-) False LOC113525937
XM_026912613.2 mRNA upstream 12301 18088623 ~ 18113472 (-) True LOC113525937
XM_026912614.2 mRNA upstream 12301 18088623 ~ 18113472 (-) False LOC113525937
XM_026912615.2 mRNA upstream 12301 18088623 ~ 18113471 (-) False LOC113525937
TU99754 other downstream 1028385 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1847362 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2991033 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3230835 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3514769 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1404798 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1492429 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2150406 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3059724 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3059724 21136046 ~ 21144621 (-) True phgdh

Expression Profile