RNA id: XM_026912597.2


Basic Information

Item Value
RNA id XM_026912597.2
length 2207
RNA type mRNA
GC content 0.45
exon number 16
gene id uxs1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11966494 ~ 11995666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTTGTTGCTACCGCGGCAGGACAATGAATCGATAGCTGATGTCATCGCTCGTGTTGTGTACAGCTGCTTCAGAGCCCATAAGGGCAAAAACGGCGTGTGGTTGCACTCTTATTTCGGTTATTAATAGCTGGTGATGTTGAGAAAGTAGGTCGGGCTGGCATATAGTTCCTCGGAATCAGGGTCTGTCTCAAACAGTGAAGGAAACAGCTCGTAGCAGTAagagagacagagagaggaatagAAGTGAGTGAATGATAGAGATTAAAGGAAGAGTCGTGCTGGAGCGTGGGTCACTCAGGACGGGATAATGCAGTAGCTGTGAGGGAGCTCCACTTCCGGCTTCAGTGCTGCATGTGCTGCATGTAGATGATGCGGATGCACTGGCTCATTACTGTCATTAACCGAAGAATTATGAAACTCCTCGTCGCCCTCGGGCTCATCGCATACATCGCCTctgtctGGGGAACCTACACCAACATGAGGTCGATTCAGGAGCATAGTGAGCTGAAGATTGAGCAGAGGATAGATGAGGCTGTTGCACCTTTGAGAGAGAAGATTCGGGATCTTGAGCTCAGTTTAACACAAAAGTATCCACCTGTGAAGTTTCTCTCTGAGAAGGATCGCAAGAGGATTTTGATCACTGGTGGTGCAGGCTTTGTGGGCTCCCACCTGACTGATAAACTGATGATGGACGGTCATGAAGTGACTGTGGTCGATAACTTTTTTACCGGCCGCAAGCGTAATGTAGAGCACTGGATTGGCCATGAGAACTTCGAGCTCATCAACCATGATGTGGTGGAACCGCTCTATATTGAAGtggaTCAGATCTATCACTTGGCCTCTCCTGCATCACCTCCCAATTACATGTATAATCCCATCAAAACCCTAAAAACCAACACTATTGGCACTCTTAATATGCTTGGTCTGGCGAAGCGTGTGGGTGCTCGACTACTTCTTGCATCCACGTCAGAGGTTTATGGAGATCCAGAGGTGCATCCTCAGAATGAAGACTATTGGGGTCATGTGAACCCGATCGGCCCGAGGGCTTGTTATGATGAAGGGAAGCGCGTGGCTGAAACTATGTGTTATGCATACATGAAACAGGAGGGGGTAGAGGTGCGAGTAGCACGGATCTTCAACACATTCGGTTCTCGGATGCATATGAATGATGGCCGGGTGGTTAGTAACTTCATCTTGCAGGCTTTACAGGGGGAGCCCCTGACGgTTTATGGTTCAGGATCTCAGACCAGAGCATTTCAGTATGTCAGTGATCTTGTGAATGGTCTTGTGGCCCTGATGAACAGTAACGTCAGCAGTCCTGTTAACCTGGGAAATCCTGAGGAACATACCATATTGGAATTTGCTCAGATGATTAAAAGCCTAGTTGTGAGTCGCAGTCATATCCAGTTCCTTCCAGAAGCACAGGATGACCCTCAGAGACGGCGGCCAGACATCCGCAAGGCAAAAATGCTGCTTGGATGGGAGCCTGTGGTGCCATTGGAGGAGGGACTGAACAAAACTATTCAGTATTTCAGCAAGGAGCTGGAGCATCAAGCCAATAATCAATATATTCCCAAACCCAAGGCTGCCCGTATGAAGAAAGGCAGACCAAGACACAACTAGAGAACAGGCTTTCTCTCAGGGATGCTGGGACATGTGGCCTCTAGCAGCCATTTTACACTGAGGTATTTTTCCCCCATAAACCGGGTGATTTGGTATTCTTATTTCCCTGAGTTTTTTGGAAAAGCAGCTCTAGCGAGAACTGCCTcttttgtgtttgcttttcaAACGTGTGcctcagaaaaagaaaagagaaaacccAGACGCTAAATACCACGTCTTGCACTTTGGATTTTGTCAATTGCCtattatttaagaaaatgttgaaaaacTCCTCTTCGTGCTTTGTGCATTTATGCCATGCAGTTTTGTTTGATGTGATCATTTTTTACTAATGTCTTTGTTTCAGTGTTGAGATTTATTATGGAGCGTAGTGATATCCACTTTATTTATCTTGAATGTGCTGCAGTGGGACATCTGGCGCtattctgaagaaaaaaagaaaactatgtGAAACGTGTTTCtgcttttttatgtaattttgagCCAAGTCTACTGTTGCCATTGTCACACTTCAAAGAGAACTCTTATGCTTTTTCTGATTTCAGGTGAAAAAggctattttaataaaatatttacactgtt

Function

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0033320 UDP-D-xylose biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0048040 UDP-glucuronate decarboxylase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96345 lncRNA downstream 109227 11844876 ~ 11857267 (-) True LOC117597344
XR_004578180.1 lncRNA downstream 109380 11847118 ~ 11857114 (-) False LOC117597344
TU96223 lncRNA downstream 202775 11760490 ~ 11763719 (-) False LOC113526311
XR_003402757.2 lncRNA downstream 202800 11760451 ~ 11763694 (-) True LOC113526311
TU96157 lncRNA downstream 276526 11688535 ~ 11689968 (-) True G81014
TU96413 lncRNA upstream 45968 12041634 ~ 12045475 (-) True G81220
TU96414 lncRNA upstream 54701 12050367 ~ 12050654 (-) True G81221
TU96415 lncRNA upstream 55752 12051418 ~ 12051772 (-) True G81222
TU96436 lncRNA upstream 119441 12115107 ~ 12115359 (-) True G81243
XR_003404757.2 lncRNA upstream 212343 12208009 ~ 12210224 (-) True LOC113546902
XM_026912621.2 mRNA downstream 71414 11887868 ~ 11895080 (-) True fhl2a
XM_026912749.2 mRNA downstream 209632 11748026 ~ 11756862 (-) True mfsd9
XM_026911292.2 mRNA downstream 228750 11710608 ~ 11737744 (-) True LOC113524909
XM_026913038.2 mRNA downstream 265461 11698385 ~ 11701033 (-) True LOC113526203
XM_026912502.2 mRNA downstream 268758 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_026912464.2 mRNA upstream 19779 12015445 ~ 12049701 (-) True st6gal2a
XM_026912569.2 mRNA upstream 89449 12085115 ~ 12088620 (-) True pdzk1
XM_026912570.2 mRNA upstream 90019 12085685 ~ 12090514 (-) False pdzk1
XM_026910761.2 mRNA upstream 486995 12482661 ~ 12496451 (-) True irs2b
XM_026910153.2 mRNA upstream 548113 12543779 ~ 12589550 (-) True col4a1
TU95687 other downstream 930933 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 995337 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1357452 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2312039 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2397374 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 717533 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 717533 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 2556785 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 2832120 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 3067759 15063425 ~ 15077195 (-) False dcaf6

Expression Profile