RNA id: XM_026912611.2


Basic Information

Item Value
RNA id XM_026912611.2
length 2098
RNA type mRNA
GC content 0.47
exon number 5
gene id fbxl3a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15435965 ~ 15441651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGCTCTCCGtcccaaaacaacaacaacgccATTTTTAGAGATCCAAGGCACCTGAAGATTCATCGCGTCAGACAGCTCGAGTGCAGGAATTAGGTCATttcacagtgacacacagagagagagagaaagagagagagggagggagagagagagagagagaaagaggtggtAATAAGAAATGAAAACGTTGTTTAAAGTTGTTTAAAGCAGCTTAGCTAACCATAAGCTTCAAATGCGCCACATCTTGCTGGTTCAGATGTTTAGGAGCGCGAGCCCAGGCTTATAGCAACACTGGCTCTTCACTGCTTCAGCAAGACATCTCTACTGACCAAACGGCAATCAGAATGAAAAGAAGATTAATCAGACACAAAGAGGCCAGCGGCTCGTCCTGTGAGGAGCGGATGGAGGTTTGCAAGAAAGTTAGACGTCCCAGCGAGGACTGTGGAGATGTGGCGTCCTGGGCATGGTTACCGCAGGAGATCCTGCTGCGTGTCTTTCAGTACTTGCCCTTGCTGGATCGAGCCTTTGCCTCTCAGGTGTGCCGTGGCTGGAATGAAGCTTTTCACATGCCTGAGCTCTGGAGATGCTTCGAGTTCGAGCTCAACCAACCTGCAAGCTCCTACTTGAAGGCCACCCATCCTGATCTCATCAAGCAGATCATCAAGAAGCACTCGAATCATTTACAGTATGTCAGTTTTAAGGTGGACAGCAGTACAGAATCAGCAGAGGCAGCCTGCAACATCCTGTCTCAGCTTGTAAACTGCTCGATAAAGACCCTCGGCCTCATTTCCACAGCACGTCCAAGCTTCATGGAGTTAACAAAGTCCCACTTCATTTCTGCACTGACTGTGGTGTTTGTCAACTCCAAATCTCTGTCGTCACTCAAGATAGACGACACGCCTGTTGATGACCCATCACTCAAGGTCCTGGTGGCCAACAACAGTGACACACTCAAACTGCTAAAAATGAGCAGCTGCCCCCATGTCTCTCCTGCTGGAATCCTGTGTGTTGCAGATCAGTGCCACGGTTTGAGGGAGCTGGCACTGAATTACCACTTGCTGAGTGACGAGCTCCTCCTTGCGCTTTCCTCAGAGAAACATGTGCATCTGGAGCACCTGCGCATCGATGTTGTGAGTGAGAACCCAGGTCAGCAGTTTCACAACATCAAAAAAAGCAGCTGGGATGCCATGGTGCGCCACTCGCCCAAGTTCAACCTCGTCATGTACTTCTTCCTCTATGAGGACGAGTTTGAGCCCTTCTTCCGGGATGAGATTCCTGTCACACACCTCTACTTCGGTCGTTCAGTCAGTAAGGAGGTGCTCGGGCGCGTGGGCATGAACTGCCCTCGCCTTGTGGAGCTGGTGGTGTGTGCTAACGGCTTGCGTCCTCTGGACGAGGAGCTGATTCGCATCGCTGAGCGCTGTACACAGCTGTCGGCCATCGGCCTGGGCGAGTGCGAAGTGTCCTGCAGCGCCTTTGTGGAGTTTGTGAGGATGTGTGGGAGACGCCTCACACAGCTCTCCATCATGGAGGAGGTGCTCATCCCTGACCACAAGTACAGCCTGGATGAAATCCACTGGGAGGTTTCAAGACACCTCGGCCGTGTCTGGTTCCCGGATATGATGCCTACATGGTAAGGCATTTACAAACTTGTTCGAGCGCCAgattattatattcattaccAGCAGGATACATCAGTGGTGTTTTGGTATTACTAACAAAAGTGTGTCAGGCGTTTGAGGACACAGTGgtgtaaacactttattagtatagtatggctttttttttcttttctgtatacCTATGTCTATATGCTGACAATCATGAAAGAATAAGCTTTTATCTATCTCATCACTGAAGCTACAGCTGTATTATCACAATTGTACAATGCAGTGTGGTTCGTTTATGTAGCTATATATTTCAcctttttagtattttttttttttttgtcaaaaagcTAGGTGCAGGATTTTGCCTTTACAGTTTAATCTAAGTATTGCATATTTTTCCACTCTAATTTGTATAAATGATGGAAACTTGGTATATGTATAGTTATAGAAATGTAGTAGAGTTGTTCTGCTGCCTATAAAAGtggg

Function

GO: NA

KEGG:

id description
K10269 FBXL3; F-box and leucine-rich repeat protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98442 lncRNA downstream 61463 15371262 ~ 15374502 (-) True G82961
TU98423 lncRNA downstream 223646 15209315 ~ 15212319 (-) True G82943
TU98372 lncRNA downstream 310317 15085363 ~ 15125648 (-) True G82904
TU98389 lncRNA downstream 325483 15107053 ~ 15110482 (-) False LOC117597380
TU98371 lncRNA downstream 330349 15085363 ~ 15105616 (-) False G82904
TU98718 lncRNA upstream 45432 15487083 ~ 15487834 (-) True G83171
TU98721 lncRNA upstream 106630 15548281 ~ 15600586 (-) True G83173
TU98774 lncRNA upstream 237799 15679450 ~ 15714440 (-) True G83216
TU98850 lncRNA upstream 388478 15830129 ~ 15887375 (-) True G83270
XR_004578248.1 lncRNA upstream 412409 15854060 ~ 15858049 (-) True LOC117597420
XM_026912869.2 mRNA downstream 5343 15426854 ~ 15430622 (-) False rsph1
XM_026912868.2 mRNA downstream 5343 15426854 ~ 15430622 (-) True rsph1
XM_026913001.2 mRNA downstream 11916 15418742 ~ 15424049 (-) True stx19
XM_034304363.1 mRNA downstream 223103 15155587 ~ 15212862 (-) False myo1b
XM_026910423.2 mRNA upstream 733 15442384 ~ 15505351 (-) False mycbp2
XM_026910462.2 mRNA upstream 733 15442384 ~ 15505351 (-) False mycbp2
XM_026910478.2 mRNA upstream 733 15442384 ~ 15505351 (-) False mycbp2
XM_026910430.2 mRNA upstream 733 15442384 ~ 15505351 (-) False mycbp2
XM_026910407.2 mRNA upstream 733 15442384 ~ 15505351 (-) False mycbp2
TU98290 other downstream 358770 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 598572 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 882506 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 2707940 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 778313 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1586656 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 4039469 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 4127100 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4785077 20226728 ~ 20237615 (-) True G85848

Expression Profile