RNA id: XM_026912614.2


Basic Information

Item Value
RNA id XM_026912614.2
length 4006
RNA type mRNA
GC content 0.46
exon number 26
gene id LOC113525937
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18088623 ~ 18114405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCCCATGCTCACAGAGCAGCTGGCCACCGCCTCGCACTGCGCTGCGCTTCAGCTCGCAGGGACTATGTAGACCTGCTCACACTGATGACACTATGATGGCTACTCGCCGCATGCACGCGCTGACATAACACTATTCATACCGACAGCTATGAATCATGCATCTGACGCTTCTCTTCATTTTGGTCGTGAGCATCCTTGTTTCCGGCTCGCAGTCGTCTGAAAGGACCCCGTCGCACGtggagAATGAGTCTGTTGGGGAAGCTGTTTCAGTGCGGGTGGAGCAGGACGCCACTGCACCACCTTCCACACACAATGGGAGCACCCAGGAGGCCGAACACACCATCACATACCCATCTCGCCTCATTTACTACCTGAACGAGGAATCTGAGAGCACTTACCATAACCTGAACACTCAGGCCAAGATCCCGGGCCAGCAGGGccagGTAGTCCATTTGGCTCAGGCCAGTTTTCAGCTTGAGGCTTTTGGATCCAGATTCATACTAGACCTCAGATTAAACAATGACCTACTATCCTCCGATTATGTGGAGATTCACTATGAGGAGGGAAAACCCATCATGTCTAAGggtgGAGAGCACTGTTATTACCGTGGGCAGGTGAGAGGGAATGAGGTGTCTCGTGTAGCCCTATCAACCTGTGATGGCTTGCAGGGCACGTTTGATGATGGCgtttatgtgtattttattgAACCTTTGAAACACTCGATTGATGGAGCGGCTAGACCTCACAGACTGCACAGGACGCCCAGCTTTCTAAGCTCTCAAGACCCCAAGGATGCAGatgaggaGGGCCAGCTGGATGACATGGCCTGGCTGCGGCGCAGGAAAAAGCGTGCAatgcCAAGGAATGTGTTTGAGGAGATGAAGTATATTGAGCTGATGATTGTCAGTGACCACAAtatgTTCAAAAGACAGAAGACCAAGCAGCAAACACGTAACTTTGCAAAGTCTGTGGTCAATCTGGTGGATGCAGTCTTTACAGAACAATTAAACACACGTGTGGTCCTGGTTGCTATGGAAATATGGACAGATAAGGACCATATTCCAATCAGTGTGATGCCACTGGACATGCTGCGAGACTTCTCCAAATACCGACAGCAGCACATAAGACAGCATGCAGATGCAGTGCACCTATTCTCTAATGTGACGTTTCACTACCGTCAGAGCAGCGCTGCATTCTTCGGAGGCATGTGTTCCCTCAGTCGTGGAGTTGGAGTGAACGAGTATGGGTCTGCATGGACTGTGGCTGTTTCACTGTCCCAGAGTCTGGCTCAGAACTTAGGCATTCAGTGGGATCCTGCATCCAGCAAGAATaAGGAGTGTGGCTGTGTTGACTCATGGGTGGGTTGCATCATGGAGGACACAGGAGTGCAGCACCCACGAAGGTTTTCTAAGTGTAGTATTTCAGACTATAAAGAGTTTCTTCTGAAAGGTGGAGGATCATGCCTTTTCAACAGGCCCAACAAGCTGGTCGAGCCGACAGAGTGTGGGAATGGCTACGTGGAGGTGGGAGAGGAGTGTGACTGCGGTGTAAGAGCTGAATGCTATAAGGAATGCTGCAAGAAGTGTTCTTTGTCAAACGGAGCACACTGTAGTGATGGGCCTTGTTGTAACAGCACCTGTCTgTTTTACCCAAGAGGCTTCAGCTGTCGCTATGCAGTGAATGACTGTGATATTTCCGAGACCTGCTCAGGAGACTCTGGACAGTGCCCTCCTAACCTCCACAAACAGGATGGCTCATTATGCCATCTTGACCAGGGACGCTGCTATAGTGGAGAGTGTAAGACCAGGGAAAACCAATGCAAATATGTGTGGGGTCCAAAGTCTGGGGGGTCGGAGAAGTTCTGCTATGAGAAGTTGAACACAGAAGGATCTGAGAAAGGGAACTGTGGGGAAGATGGAGACAAATGGATCCAGTGCGGAAAGCAtGATGTGTTCTGTGGGTATCTGCTGTGCACTAATGTTGGCCCAGTGCCCCGCATTGGAAGAATAAAGGGAGAGATTACGCCCACATCCTTTAACCACCAGGGCCGACTGATTGAATGCAGTGGCGGTCATGTGTTATTGGATGATGACACTGATCTGGGTTACGTGGAGGATGGGACGCCATGTGGGCCGTCCATGATGTGCCTTGACCGTAAGTGTCTGCCCATCCAATTCCTCAACATGAGTGCCTGTCCTACCGGGCCCAATGGCCGCATCTGCTCAAACCATGGGGTTTGCAATAATGAGGCGACATGTACGTGTGATGTGACATGGGCAGGGACTGACTGCAGCATTCCTGACCCTCCTAAAGAGCCCGCTTCCAGTGAAGATGAAGAACCACGGgCAAATGTGGCCACTAACAGGCTGATAGGGGCTCTAGCAGGGACTGTTCTGGCCCTGGGGGTTCTGTTTGGAGGAACTGGGTGGGGACTTGaAAACGTCAAAAAGCGAAGGTACGACCCGAATGCAGCCGCCATCTAGTGGAGAAAATGGACGGTGATCCTCCAAAGCTTCTTAAGTAATCTACAGCTGGACTACAATTTTTGCTGCTCTTTCTGACAttagttataaaatataatataaaataaaatgatatacagTAGATAACAAACCACATATTAGTTATGTAGAACTGCAGCTTCTCAGCTATGCCCTATTTCAAATCCCAAGCTCACTGAGATGGTTTTATTGCCAGGCCTCATCTTTCATAATGACCAATCCCACTTTCAACTCATCACACCACAGAGCACCAGCTACTCTGACACCCTGGCCAAAGGGCTGCATGGCTACCTATGCTTACTGATACTTGACAGAACAGAACAGTAATCCCTCTGAAAGGGAAAGGAGAAAATGCCCTTTCACACCTATAGGAGAACAAATATGCCATTGCTCTGGTACTACATCAGTGTGAAAGGGTGAGTTCTGCTCTCTGAACTGCAGTTACTCTGGGACAGATTGTAAATCACCACAGACTGCAACTTCCTCAGTGGTATATTACATCAAGTTGAACCCAGCTGCACATAGGCCTTAACATATTACACATATCACATAGAGATGTGGAGTAGTCTGGACTCTGCACAGGCAGAGAATGAGTTAAGGTGCTGATCTGTAAGATCATTTTACCCTGACTGTTTCAGCATTATGTTTTGCTTCTGATAGAGCATGTTGTATAGTAGACATAGTTTGAAACAGTCTTACAACCATTTTTGCTCATTCACGTTCAACACAAGTATATAACTATAGTTTTAAATCTTCTCAGATTAAGATGTGttgtatacaaatatatatcaGGTGAGGGATTGCTGAGGGAATCAGACTAGATAAGCCAATAAGATACTGCTTGAAGTTGTTGAGTTTGATCTTGACAGTGACTTAAAGCCAAAGAAATATTTGCAGGCTTTTGGATGTCTAATGGAGAACACCTTTCCCCTTGTAACATGTAGGATTAGACATGGAGGTGGCTTccaattaaacacaaaaaaaaaaaaaaatcactgacagtTTGCCATATCACATTCTGGGGAGATGTCAAGTAACAGTAAGTCAAAAAATgacttatatacagtataagcttGAAGATGTTTCATCACTTATCCATTTCTGAACTGATTCAGTTGGTCTAAACTGCTGAAGCCATCCTGAGTAGAGAAAACTTCTTCAAAATTACACTGCAAGTCACTTTGACTTACTGGTGCTAAACAATTTGGGGCCCTGGAAGATTGAAAACCTTCATGGACATCCTGGGGGTAATGtgtaatcacacaaacacatacatgtttaattttgaCCTTAGATAAGGTCTTGTACCAATTGTACACTTCATTTAGCTCTCTCTGCTAAGCTTGTAGGGTGCAATTGCTTTGCTGCATGCATTCACAATAGTTGACTTATTACTATATAAAGCAGTCCCCAAACCAATAAGAGACTTATGCTACAGAAGGATACGTGTGCATGTCAGCTACAGAACATCTAACTTTTATttactatgcaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100258 lncRNA downstream 255034 17833375 ~ 17833589 (-) True G84411
TU100243 lncRNA downstream 344598 17740639 ~ 17744025 (-) True LOC117597384
XR_004578231.1 lncRNA downstream 344603 17740637 ~ 17744020 (-) False LOC117597384
TU100224 lncRNA downstream 360626 17726653 ~ 17727997 (-) True G84394
TU100221 lncRNA downstream 391537 17695290 ~ 17697086 (-) False evx2
TU100815 lncRNA upstream 17938 18131410 ~ 18131998 (-) True G84881
TU100814 lncRNA upstream 19930 18133402 ~ 18133689 (-) True G84880
TU100816 lncRNA upstream 21364 18134836 ~ 18135614 (-) True G84882
TU100817 lncRNA upstream 22197 18135669 ~ 18137083 (-) True G84883
TU100942 lncRNA upstream 426881 18540353 ~ 18555865 (-) True G84975
XM_026913233.2 mRNA downstream 3752 18082115 ~ 18084871 (-) True LOC113526302
XM_026912592.2 mRNA downstream 12301 18068228 ~ 18076322 (-) True casp10
XM_026946559.2 mRNA downstream 26354 18054788 ~ 18062269 (-) False prkra
XM_026946551.2 mRNA downstream 26400 18054788 ~ 18062223 (-) True prkra
XM_026911916.2 mRNA downstream 97114 17937053 ~ 17991509 (-) True pde11a
XM_026912870.2 mRNA upstream 32934 18146406 ~ 18161642 (-) True stk24a
XM_026912589.2 mRNA upstream 49708 18163180 ~ 18174048 (-) True slc15a1a
XM_026912590.2 mRNA upstream 50246 18163718 ~ 18174048 (-) False slc15a1a
XM_026912585.2 mRNA upstream 61524 18174996 ~ 18258223 (-) True zmp:0000001200
XM_026912587.2 mRNA upstream 61524 18174996 ~ 18258222 (-) False zmp:0000001200
TU99754 other downstream 1048780 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1867757 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3011428 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3251230 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3535164 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1367648 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1455279 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2113256 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3022574 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3022574 21136046 ~ 21144621 (-) True phgdh

Expression Profile