RNA id: XM_026912621.2


Basic Information

Item Value
RNA id XM_026912621.2
length 1522
RNA type mRNA
GC content 0.46
exon number 7
gene id fhl2a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11887868 ~ 11895080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTGTTCATACTCCACCACCTCAATTAGCTGCCCCATAGGTGGAGTAATTCAATCAGGATCTCCTAGAGCACTGTACCACAGACACCCTGCTCAGTCCAGCTAGACTCAGCACACAGAAAGGCTGCTCAGTCTCTAAGGAGGAACGATGACAGAGCGCTATGACTGTCACTACTGTAAGGAGTCCCTGTTTGGGAAAAAGTATGTCCTGCGGGAGGAGAACCCGTACTGTGTGAAGTGCTATGAGAGCCTGTACTCCAACACCTGTGAGGAGTGCAAGAAGCCTATCGGTTGCAACAGCAGGGACCTGTCGTATAAGGACCGCCACTGGCATGAGGACTGTTTCCACTGCTCCAATGTAAGCAGCTCACTGGTGGACAAACCGTTCTCCACCAAGGACGAGCAGCTGCTGTGTACTGAGTGCTACTCCAACGAGTACTCCTCCAAGTGCCACGAGTGCAAGAAGACCATCATGCCTGGATCCAGGAAGATGGAGCATAAGGGCAACAGCTGGCATGAGACCTGCTTCTCCTGCAAGCGCTGCCAGCAGCCCATTGGTACCAAGAGCTTCATCCCCAAGGACAACTGCAACTATTGCGTGCCCTGCTATGAGAAGCAGTTCGCTATGCAGTGTGTGCACTGCAAGAAGCCCATCACCACTGGAGGCGTGACCTACCATGACCAGCCGTGGCACAAGGACTGCTTCCTGTGCACTGGCTGCAAGCAGCAGCTCTCTGGCCAGCGCTTCACATCTCGTGATGACTTTGCCTACTGCCTCAACTGCTTCTGTAACCTGTACGCCAAGAAGTGTGCCTCCTGCACCTCTCCAATCAGTGGGCTTGGAGGAAGCAAGTATATCTCTTTTGAGGAGCGCCAGTGGCACAACGACTGTTTCAACTGCAAGAAGTGCTCGGTGTCTCTCGTGGGCCGAGGCTTCCTGACCGAGAGAGATGACATCCTGTGCCCCGAGTGTGGCAAAGACATCTAAGAAGAATTCATacaaattagagaaaaaaaccTAAAGCACAGCAGCATGGGGAAATCCTGATACTCTTATATCATAGCTATGGATTTTAGCACCACTGATTAGAAACATGTACTATTTTAGAACAGGCAAATTCACTTTATCCTCAATAACAGCTTCAGCACTCAAGAGTACAATAAATGTCACCAGATATATTTTGCCTAgatgtttatttcctttatgGCATGAGCAATAAGAgctacacaatttaaaaaaaaaaaaaaaaagataaaaacattaGCTTTGGAACTTTAAAAATAGATTATGatgtttaatattaacacactaaccaGTTTAAAATGAACTCTGATAGTGAGCCTTTATGAGAGCAGAACTTGTTCCTATTTCTCACGGTCATCTAATACAGTgcgataaataaaataaagagtagTAAGATTCTGCCTGGAATTTTATCTGTGAAGATTTCTCAGTAATGCTTGTACGTATCAAACAACGTATGTATCAAGAtacaaaacttattaaaacttttaaattcTAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14380 FHL2; four and a half LIM domains protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96345 lncRNA downstream 30601 11844876 ~ 11857267 (-) True LOC117597344
XR_004578180.1 lncRNA downstream 30754 11847118 ~ 11857114 (-) False LOC117597344
TU96223 lncRNA downstream 124149 11760490 ~ 11763719 (-) False LOC113526311
XR_003402757.2 lncRNA downstream 124174 11760451 ~ 11763694 (-) True LOC113526311
TU96157 lncRNA downstream 197900 11688535 ~ 11689968 (-) True G81014
TU96413 lncRNA upstream 146554 12041634 ~ 12045475 (-) True G81220
TU96414 lncRNA upstream 155287 12050367 ~ 12050654 (-) True G81221
TU96415 lncRNA upstream 156338 12051418 ~ 12051772 (-) True G81222
TU96436 lncRNA upstream 220027 12115107 ~ 12115359 (-) True G81243
XR_003404757.2 lncRNA upstream 312929 12208009 ~ 12210224 (-) True LOC113546902
XM_026912749.2 mRNA downstream 131006 11748026 ~ 11756862 (-) True mfsd9
XM_026911292.2 mRNA downstream 150124 11710608 ~ 11737744 (-) True LOC113524909
XM_026913038.2 mRNA downstream 186835 11698385 ~ 11701033 (-) True LOC113526203
XM_026912502.2 mRNA downstream 190132 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_026912501.2 mRNA downstream 190132 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_026912597.2 mRNA upstream 71414 11966494 ~ 11995666 (-) False uxs1
XM_034304859.1 mRNA upstream 71414 11966494 ~ 11995666 (-) False uxs1
XM_034304858.1 mRNA upstream 71414 11966494 ~ 11995666 (-) True uxs1
XM_026912464.2 mRNA upstream 120365 12015445 ~ 12049701 (-) True st6gal2a
XM_026912569.2 mRNA upstream 190035 12085115 ~ 12088620 (-) True pdzk1
TU95687 other downstream 852307 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 916711 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1278826 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2233413 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2318748 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 818119 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 818119 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 2657371 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 2932706 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 3168345 15063425 ~ 15077195 (-) False dcaf6

Expression Profile