RNA id: XM_026912661.1


Basic Information

Item Value
RNA id XM_026912661.1
length 587
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113525961
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16098753 ~ 16099552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGAAAGATTATCTTCTACGAGGACAGGAACTTTCAGGGCCGTTCCTATGAGTGCACCAGCGACTGTGCTGATCTGTACTCCCATTTCAGCCGCTGCAACTCCATTCAGGTAGAAAGTGGGTACTGGATGGTGTATGAACGGCCAAACTTTATGGGTTACCAGTACTTTCTCCCTAGAGGGGAATACCCCAATTATCAAGGGTGGATGGGTTTTAACGACTGCGTCAGATCCTGTCGTATGATACCTCAGCATCAAGGGTCTCATAGAATCAGGATCTATGAGCATTCTGACTTTAGTGGACAGATGATGGAGCTTACTGATgactgtccatctgtctatgATCGCTTCCACTACAACGACATCCATTCCTGCAATGTGCTTGATGGATACTGGCTGTTCTATGAGCATCCCAATTACAGAGGCAGACAGTATCTGCTGAGACCTGGTGAATACAGGAGATACAGTGACTGGGGCGCCATAACCCCAAGGATTGGGTCCATCAAGCGCATTATCTACTCAAAGTGAATGGCTAAAATCTTGATCAGTTGAGTTTGACCAATAAATTTCAATTCATTGTCTCcaaa

Function

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99098 lncRNA downstream 22133 16074499 ~ 16076620 (-) False lmo7a
TU99103 lncRNA downstream 25682 16072840 ~ 16073071 (-) True G83474
TU99102 lncRNA downstream 26069 16072397 ~ 16072684 (-) True G83473
TU99082 lncRNA downstream 68010 16030534 ~ 16030743 (-) True G83457
TU99081 lncRNA downstream 72564 16025382 ~ 16026189 (-) True G83456
XR_004578163.1 lncRNA upstream 124789 16224341 ~ 16228437 (-) True LOC117597324
TU99247 lncRNA upstream 275033 16374585 ~ 16376286 (-) False si:dkey-91i10.2
TU99271 lncRNA upstream 309876 16409428 ~ 16409893 (-) True G83614
TU99680 lncRNA upstream 865959 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 1027758 17127310 ~ 17128680 (-) True G84061
XM_034304708.1 mRNA downstream 13685 16079562 ~ 16085068 (-) False uchl3
XM_026947885.2 mRNA downstream 13690 16079562 ~ 16085063 (-) True uchl3
XM_034304336.1 mRNA downstream 22364 16043283 ~ 16076389 (-) False lmo7a
XM_034304342.1 mRNA downstream 22541 16043283 ~ 16076212 (-) False lmo7a
XM_034304341.1 mRNA downstream 22541 16043283 ~ 16076212 (-) False lmo7a
XM_026911595.2 mRNA upstream 194340 16293892 ~ 16349242 (-) False neb
XM_026911579.2 mRNA upstream 194340 16293892 ~ 16349242 (-) False neb
XM_026911566.2 mRNA upstream 194340 16293892 ~ 16349242 (-) False neb
XM_026911572.2 mRNA upstream 194340 16293892 ~ 16349242 (-) False neb
XM_026911559.2 mRNA upstream 194340 16293892 ~ 16349242 (-) False neb
TU98290 other downstream 1021558 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1261360 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1545294 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3370728 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 120412 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 928755 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3381568 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3469199 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4127176 20226728 ~ 20237615 (-) True G85848