RNA id: XM_026912694.2


Basic Information

Item Value
RNA id XM_026912694.2
length 1422
RNA type mRNA
GC content 0.46
exon number 6
gene id arl5a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16353143 ~ 16362904 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTCCTCAGGCGCTATTAGCTGCTCTTCTCCACGTCGCTGTGCTCATTCAGCTGTGTTGCGGCGGAAGGCAGCAGCTGCAGCACCTCATCTACACCAAGCTGCGCGACCTCAATTACGCTTTTCTAACGATTATCTTCCTGAATCTGGCTATGACACTAGGCACATTATGCAGCATTTCAAAAGCAGCGGCGTTATCAATCGCTGTGTTTACTTCTCACCTCAATTTCGCCGCGAAAATATCCCCTGCATTTAGCTAAATCGCTGATTGTAACCGGGAGCTAGCTTGCTTCTGCTTTCGACTGGATTGCACAAGTGGCTTATACGAAGCAGCTGTATTTTAGACTATTTGTGTTGTCGGTGCGAAGAAAAGTCATCCAGTAGACATGGGAATCATTTTTACAAAGTTATGGAGGCTTTTTAACCACCAAGAGCATAAAGTCATCATTGTTGGACTGGACAATGCAGGAAAGACAACAATCCTTTATCAATTTTCTATGAATGAAGTAGTTCACACCTCACCCACGATAGGCAGCAATGTAGAGGAGATTGTGGTGAACAACACCCATTTCCTCATGTGGGATATAGGAGGCCAGGAATCTCTGCGTTCTTCATGGAATACCTACTACACTAACACAGAGTTTGTGATAGTTGTGGTGGacagcacagacagagagaggatcTCTGTGACCAGAGAAGAGCTCTACAGAATGCTAGCTCATGAGGACCTTAGAAAGGCTGGTTTGTTGGTGTTTGCCAACAAGCAGGATGTGAAAGGTTGTATGACAGTGGCTGAAATCTCACAGAGCCTACAGCTTACTTCTGTTAAGGACCACCAGTGGCACATCCAGGCCTGCTGTGCTCTCACAGGAGAGGGACTGTGTCAGGGACTGGAGTGGATGATGTCACGACTGCGAGTGAGATGACTTCTGACTGTAGCAAACGGTgcactctctttctcctccacGCGTGGAGGCCAACTGTCGCTCACTGTGAAGGTGGCCTGGAGATGTCACCTGGACTCGTgtgattaatttattacagCTTGTGGAGAACTGTGAACAGAAATCTTCAACTAACTATTCAAAAGGTTCAGGATGTGCAAAACCACATAAACTCAGTGTTTTTCTGCTCGGTTGCTCTCTAAAGAGTCTAACAGGAAAGATGCAGAGGCGCATGTGGACTGAGCGCATGTGTAACTGAGTGAGGCTCTGCATGGAGTGACTTTGCAGTATTGTCTGACTGCCTGACATAGTATTGCACAGTGTGTTCAGTCCAGTATTTACCTTGACCTTGAGCCTGTGTCTGAACCTCTCAGAGCCCAGGGCATCAAATAGAGACTAAAAATACCCTGCAAGGGAAGACTcactttatgtttaaaaaaaaaaaaaaaaaagtgaaataaagtgtttttaCCCATGAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07949 ARL5A; ADP-ribosylation factor-like protein 5A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578163.1 lncRNA downstream 124706 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 276523 16074499 ~ 16076620 (-) False lmo7a
TU99103 lncRNA downstream 280072 16072840 ~ 16073071 (-) True G83474
TU99102 lncRNA downstream 280459 16072397 ~ 16072684 (-) True G83473
TU99082 lncRNA downstream 322400 16030534 ~ 16030743 (-) True G83457
TU99247 lncRNA upstream 11681 16374585 ~ 16376286 (-) False si:dkey-91i10.2
TU99271 lncRNA upstream 46524 16409428 ~ 16409893 (-) True G83614
TU99680 lncRNA upstream 602607 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 764406 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 944665 17307569 ~ 17311955 (-) True G84177
XM_026911595.2 mRNA downstream 3901 16293892 ~ 16349242 (-) False neb
XM_026911579.2 mRNA downstream 3901 16293892 ~ 16349242 (-) False neb
XM_026911566.2 mRNA downstream 3901 16293892 ~ 16349242 (-) False neb
XM_026911572.2 mRNA downstream 3901 16293892 ~ 16349242 (-) False neb
XM_026911559.2 mRNA downstream 3901 16293892 ~ 16349242 (-) False neb
XM_034304896.1 mRNA upstream 7323 16370227 ~ 16406478 (-) False si:dkey-91i10.2
XM_026913177.2 mRNA upstream 7323 16370227 ~ 16391887 (-) True si:dkey-91i10.2
XM_026946587.2 mRNA upstream 67028 16429932 ~ 16457212 (-) True kcnj3a
XM_026912793.2 mRNA upstream 109155 16472059 ~ 16516287 (-) True galnt13
XM_026910878.2 mRNA upstream 199770 16562674 ~ 16614183 (-) False fmnl2a
TU99188 other downstream 132277 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1275948 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1515750 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1799684 14552451 ~ 14553459 (-) False med14
TU96950 other downstream 3636474 12713199 ~ 12716669 (-) False hspbap1
TU99754 other upstream 665403 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3118216 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3205847 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3863824 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4773142 21136046 ~ 21144621 (-) False phgdh

Expression Profile