RNA id: XM_034304693.1


Basic Information

Item Value
RNA id XM_034304693.1
length 2707
RNA type mRNA
GC content 0.45
exon number 14
gene id chn1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17486048 ~ 17523051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGTCCCTGAGGACAGAATGAGCTTTGGGTCACGTGGTCTCACAACATGGCGGCTTCAGTACAGGGATTCAGAAGCCTGTTCGGTGAGGATTTCCTTCATGGAATATCtctgaatgaaagagagagagagagaaagacagagagagagagagagagagagagagagagggggagagagaaggaaggaactTGTCGCTGCAGTGCAGAGCTTTGTCCATTGGAATTAACAGCAATAACATGGCTATCCTCGTTTTCGATAACGATGAATACAGACCACCAGTATGGAAGTCGTACTtGTATCAGCTCCAGCAGGAGGCGCCACACCCTCGGCGAGTCACATGCATTTGTGAGGTTGAAAACAGGCCGAAATACTACGGTCGAGAGTACCACGGCATGATCTCCAGAGAGGAGGCGGATCAGCTGCTGAGTGTGGCAGAAGGAAGTTACCTCataagagagagccagagacaGCCTGGCACTTACACCTTAGCCTTACGCTTCGGGAACCAGACCCGCAACTTCCGCCTCTATTACGATGGCAAGCACTTTGTGGGAGAGAAACGGTTTGAGTCAATCCACGACTTGGTCACAGATGGCCTGATCACACTCTACATCGAGACCAAAGCAGCTGAGTACATCTCTAAGATGACCATTAACCCCATTTATGAGCACGTGGGATATACCACGCTGAACCGTGAGCCAGCACTGAAGAAACCTGCACCCGTCAGCACAGACACACCTGACTGGAAGGAGCCATCCGGGGAGGAGAGCGGCCTGGAAGAGAGGCTCAGCTCGCTGGTGCGCCGGGCCACGCTGAAGGACAACGACCGCGTACCCAAGTATGAGAAAGTCCACAACTTTAAGGTACACACATTCAGAGGGCCGCACTGGTGCGAGTATTGTGCCAACTTTATGTGGGGGCTCATTGCTCAGGGGGTCAAATGcgcagATTGTGGCTTGAATGTTCATAAGCAATGCTCCAAGATGGTTCCCAATGACTGTAAGCCAGACCTGAAACATGTGAAGAAAGTGTACAGCTGTGATTTGACCACTCTGGTAAAAGCCCATAATTCCAAACGACCCATGGTGGTGGATATGTGCATACGGGAGATTGAATCACGAGGTCTGAAGTCAGAAGGTCTCTACAGAGTGTCTGGCTTCAGTGATTTAATTGAAGATGTCAAGTTGTCCTTTGACAGAGATGGGGAGAAGGCAGACATCTCAGTGAACACGTATGAAGATATTAACATCATCACGGGTGCTCTTAAGCTCTACTTCAGGGAATTGCccattcctgttatcacttacgacGCATATCCACGCTTCATCGAGGCTGCCAAGCTGACAGACCCAGATGAGCATCTCGAGGCGCTTCACGAAGCCCTGAAGCAACTGCCTCCTGCTCACTGTGAAACTCTGAGGTATCTGATGGGTCACTTAAAAAGagtgaCCCAGAATGAAAAGGATAACCTGATGAACGCAGAGAATTTGGGGATCGTGTTTGGTCCCACTCTGATGCGCGCGCCCGACCTCGACGCCATGACAGCACTGAACGATATTCGCTACCAGAGGCAGGTGGTAGAGTCTCTGATAAAGAACGAAGACATCCTCTTCTAGCCTGTCCATCATTCCACCTATATGAAGgaacagttgtttttttaaatcatgggCTGCAGCTCAtgctgtgtttctttttgtgtAAAGACTTGAAACTGAATATGAAGGACCATTGTATAATAGTCCATTCTTTCCACATCTGGTGGACCAGTTCTAATTGGTTAACgctctatttttttcttgtttaatggGCGTGGATTACGTACCTTAACATTTGCATGTCTTCCTCCCCATTTTTGTCGGGGGTTACGGTAACTGAACAGCGGGACTCTGCAGAGccagtgttgtttattttgtgacGGTTTAGGGGTTACTGAGGAATAAAAGCTAGCCTCGACCTCCTGCTGCAGCATGTGATGAAGCTCGTGAAATCTGACGCGTCGTGACTGTACTTTTATTTGTCCCATGTATGTACACTAGTTCCTACTTGCCAAAcgggttttgtgttttgtgagacttgtaaatgtgatttttcccGGTGATTTTTGGTGACACTTTACTTGAAAAGCTCAAAGTAAAAGCTGCTTTAGAAAACATTGTTAAGTCGTAAACAAGAAACTTCTGTAAACTCATTGTGGGCTTTATAGTTAACAGGTATAGTACCAGTAACAGCATGTATTAATGTGGTGAAATCCAGCTGTCTTAGGTTGTTCTTACATTCAACAGATTTGATTTTGTACTTGCTGAGTTGCTTACATCATTTTCTGTATGACCAGTGATTAATATTAGCTcaactttttcattttgtttatactGAGTATCTCATGAATGTCATGTTACCAGTTATCAATAGCTCTTCAAGTAAAGTGTCactattgattttttaaaaacctgtgacTTTTTTGATCCTTTGTCTCTGCCTATAATCTGCCTTTTTCATGCAGTACCTCTTCAGATGACTCTCCAGAGGCTCTTCAGCTCTACTGATGAAGGATATTCCAATCCGTTTACTACTCAGTGTCTGTCATAGTAGTCTGGCCTTTACAGAAATCTCTTGCACTCTGAATAGAACTGGCTGGTGTTTCTGGttgtaatgtttttgtatttgatttGTTCAtggattaatttattaaacGTCACTTTTAGAAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function
GO:0001565 phorbol ester receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100003 lncRNA downstream 54617 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA downstream 54726 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA downstream 54726 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA downstream 54726 17408749 ~ 17431322 (-) False LOC117597450
TU100005 lncRNA downstream 94101 17391684 ~ 17391947 (-) True G84227
TU100221 lncRNA upstream 172245 17695290 ~ 17697086 (-) False evx2
TU100224 lncRNA upstream 203608 17726653 ~ 17727997 (-) True G84394
XR_004578231.1 lncRNA upstream 217592 17740637 ~ 17744020 (-) False LOC117597384
TU100243 lncRNA upstream 217594 17740639 ~ 17744025 (-) True LOC117597384
TU100258 lncRNA upstream 310330 17833375 ~ 17833589 (-) True G84411
XM_026947803.2 mRNA downstream 4039 17473115 ~ 17482009 (-) True LOC113547453
XM_026913156.2 mRNA downstream 13757 17465688 ~ 17472291 (-) False wipf1a
XM_026913157.1 mRNA downstream 13831 17465688 ~ 17472217 (-) False wipf1a
XM_026913155.1 mRNA downstream 13831 17465688 ~ 17472217 (-) True wipf1a
XM_026912529.2 mRNA downstream 21773 17449880 ~ 17464275 (-) True gpr155a
XM_026911759.2 mRNA upstream 6892 17529937 ~ 17556165 (-) True atf2
XM_026911770.2 mRNA upstream 33774 17556819 ~ 17560073 (-) False atp5mc3a
XM_026911778.2 mRNA upstream 33774 17556819 ~ 17560015 (-) True atp5mc3a
XM_034304793.1 mRNA upstream 144521 17667566 ~ 17679161 (-) False lnpa
XM_034304789.1 mRNA upstream 144522 17667567 ~ 17679161 (-) False lnpa
TU99754 other downstream 446205 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1265182 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2408853 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2648655 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2932589 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1958075 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2045706 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2703683 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3613001 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3613001 21136046 ~ 21144621 (-) True phgdh

Expression Profile