RNA id: XM_026912742.2


Basic Information

Item Value
RNA id XM_026912742.2
length 5642
RNA type mRNA
GC content 0.41
exon number 6
gene id klf12b
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10387369 ~ 10425163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGTCGGAAACCTCCCACGAGGGGCCCCGTGTAATTCGATGCACGCTGTTAAAGCTTAGAGTATATTGTCTTCTCTTGCTTATGAAGCCTCCACCCACTGGCCCACCCTACATTTAGTGGATCATGTGACTCTGGTAAGTCATTTGCAAGTACAACAGTTCTCTGTGAGCCCCCATTCATTTCCTGAGAACTACCCAGAGCAGCTGAGAGGAGAGGAGCAGAGGGGAGGGAGTCTCAGAGAGCGAGCgaggagaggaagacagagagagagcggacTGTATAAGGAAAACAGTTTCTGCCGCTCTGCAGCTCCTGATCAGACGCCATCAATAACAGGATGTTAATGCTTGACGGAATGCCAGCAGTCCGAGTCAAAGCAGAGCCTCTGGAATCTGAGAGAGGGTCCCCTAAAGTGCACAACTACCCTGATATGGAGGCGGTGCCCCTTCTCCTTAGCAAAGTGAAGGCAGAGCCACCGGAGGACCTGCTCTCTTCTGAGCACTTTCACACTCAGACAGAACCCGTGGACCTATCGATCAACAAGACTCGGTCCTCACCTCCTTCCTCCACTGCCTCGCCTATCACTTCGGCCTTCTGTCCgtcctcctcttcatcttcatcatcatcctcgCCTTCTGTCATCGCCTCCATCTCTTCAGGAAAGCCCTCGGTGTTGACTCCTGGGCCGCTTGTGGGCTCTCCCTCGGGGGTCCGAGGCCAGTCATATTTACACATCATCCACCCAGTGCCGCCTTCCAGCCCCAGCAAACTGGCCAGACAGGTGCAGCGCATCCCGGTGGTGGTGCAGTCACTGCCGCTAATGTACACTACAGCGGTGCGCTCACCCTCCAACCATATCAACTCCACCATCATGGTCCCTCTGCTGGACGAGGCCAAAAGCCAGGGCAAAGcagcacaatCAGACATAAACGGCTTGTCACCAAGACAAATCAGaagtgacagtgatgatgacgaCCTGCCAAATGTAACCTTGGACAGCGTCAATGAAACAGGATCCACCGCCCTGTCTATAGCACGAGCAGTGCAGGATTCCATGTCACCGTTCAGTATTGAGAGCATGAGACGGCCACGGCGGTCCGAGTCTCCAGACTCTAAGAAGAGGCGCATTCACAGATGTGACTTTGACGGCTGCAGTAAGGTTTACACTAAGAGCTCCCACCTAAAAGCACAtcggagaacacacacagGTGAGAAGCCATACAAGTGTACCTGGGATGGCTGTACATGGAAGTTTGCTCGCTCAGATGAGTTGACGCGGCATTATCGGAAACATACAGGAGTGAAGCCTTTCAAGTGTGTGGACTGTGATCGCAGCTTCTCACGCTCGGACCACCTGGCCCTGCACCGGCGCAGACACATGCTGGTCTGAGTGAAGGCCacctcacacaccctctctctcccacacacacgtgcgcatgCATGCCGGGGGAGCTGGGTCTCTCCTTGCACTTGTTCAGCTGGGCTGGACACAGTCATGGCCATCCCAGGCCCTGgtgaaaagtgagagagaggaggtttGAAGGATGCATGATGGACAGAATGTGTTGATAGAGCTGAACAGGGTCTGCCTCAAGGATGGAGCAAAGCTGCTCTACAGATCTGGGCTCATCTTGAAGTTTCAGGACATCTTGAACTGGAGCACTTGTCCAGATCCTGGTTGTTAGTTCTTACGTGAGAGTTCTTCtgtctgcagttttttttttttttttttaaatttagcatccttgttttgttctcatttaaaatgtctgcTTCCCTTTTGCCATCAACAATGTGAAGAACTGCAGTATTGAATGGCTTCCTCTTTTGAGATCTGGAGCTTGATATTGTAGACACAGCCAGGTTCCTACAGGAACAACATTTTCATAAATCTCAATTTCCTCCAAAGCCAGCACACCTGATTATGAGGAGTCATTTCTTTGGCAACAGAGAAGAGACCCTGAGTCAGCGATTCCTGAGGTGAGGTGGCTGGAGATTTTTCATATAACGCAAGTCCGCAAATCATCGAATGAGATTATACACACAGCAGGTGACACATCATGGGAATCATGCAGTTTAtatattatgttttgttttccccTGATGTTGGTTTTCTCACACTAAAACTGTTTTCTGCAGCACAGGCACTGAAGTATATGGGGTACATTTGGCTTTAAGAACTCTCAGCTGGCATTTTGCTGTGCTTTATGGTGACAAACAGGGATATAAAACAGCGCATTCAGTTCTGTGATTAGCCAGTGAGTACGATTGTACTCTGTTCATATGATTTTATGTTTGAATTATTTTCCCTGCTTAAGCCTTTTCCTATTCCTGCTGTGTCACAGCTTTGAATAGGATGGGCCCTGAAATAAACTAATAGAGTAGAGCACTATgttcatcacacacaacactgacctccaccatgtttgactggCTGACACAAAGCTCAATGCCCTCTTTGGCTTTGAGGAAATTtgggtgcaaaaaaacaaaacaaaaacgcaAAACACTTCTGCTAACATGAGCCTTTGATGGTGTGATCCGTTTTTTGTACTCGAACGGACAATACAAGCCAGGAGAGCAATACACTCACTCTAGAGTGACGAGAGAGGGAGACGGCCTCAAGGCTCTCTCACTTACTCCATCAACAGAGGGCTTTCAAAACATGGACAAATCGCTGACTTTCTACCATTGCCACTTGTTTTTCTATACTAGAGAATCTTGTATATTTGTAATGGATTTGTagctgtaatttttaaaatagcaaTAGCATATTGCTATTTTAATCTCACACCTAAAGGATTTGATTGCACTCAGAAGaatagattttctttttaaagagcCATTAAATGTGGCACTGCAGGTTTGCCCAAAAGAAGTTCATTTAGTTCCCGTAATCCCttatgatacacacacacacacacacacacacacacatgcacacagataaTGCATGCAATGGATCTAGGGCATTTAATTGAACATTTCTCAAGCGTATTCTCAtcatattttaaagtatttacatttttaaattaaaaaaaaaatcattgaattACTTGACTCGCTTTTGTCACTCGGAATctgaaatgtagtttttttgATGTATAGTGCACTACTTTGGTCAAGTTTTGTCTAGTGCACTAAACAGTAAGCTGTTTTACCTTCATACTGACTCCCAAATACAAATAGGCCACTAGAGGGCGATCAGCAAATAAAAGTTCAGTAAAGAacacatgaaacaaaaaaaaaaaaaaatcttacatgTTCATATTTGTGGCAGTGATTTGTTCATAAGTTTCGTGTCCAGTGAGAAGGTTAAGTCAATAAGTCATCCATTCTGAGTTGCCAGATGGTTTGCTCATCTTTGGTGGCCTTAAGATAAATATTAGATGATATATGAAATGATGTGACATAcacaaaatctgttttattcatcCCAAATAAACGTCATCGTATACACAATGTTAAAGCATCCACTGTACGATGGGAATGTCATCAGATTGGTGTGAGAGTAGCACTTTCAAATGGCCAGTAAAAGCCTCAgtgatacatacacacacacatgtacaaatgcacacacacacacactcgtgcacTGCTGTTGGAATCTCCATATACATATTTTCAACTAACAAATCAAAATTGAAATGCAGTTTTGTGAAATGCTGTAAAAGGAATGTGTCCAGTACAAAACTAACATGACCAGCGTCACCTTGCTTTTTTGTGATCTGAAGTATTATAATctattatgtttttgtttatttgtttgtttgtctacACGTGTGTTTTCTGTGGTACATGGGCTTGAGTGTATCATCAGCACCTTGTTTTTATGAagtatgaatatgaaatgaattattttcagTTAGACATAACATTAATCACCAGTGTATCTTATCatcttatactgtatttttgaGAAATCTCCTCAATGTGGGGCACTTCATCTGCATATTGCTATTTTATGTAAAAagaaatcttttaaaatgttgtaatatatgtgaaagtgaaagttATTACTCAGTTTTGAAGGCTGTAAATACCTATTGAGAATAgggctttttattattattattattttttttaatacaaggGATTAACTTTATACAACTACAATAAAGAGATGATCATTACCAGTTGGTACACAGTGTATAATGGGACTGTGTGGGAGAGTGTTTGAGGTTTTATCATCTTAAATGCTCCTGTTCCTTATGATTAATGTGTAGGGATTAAACAATCCATCTAAATGTACACAGTGCTGAGGATCAGCTGCCTCTGTGCACATTCAGCCATTTCTAATACTctcttaaatgtttttataacagtaatatttcacaaaatgtaaaaggaaaagataaaaacaaCCCAGTCAAATGAATGTCCCTTTCCAAACAGTATTCAAGAGCCATCAGCATTTTTCTCTTtgctgttttttcatttttatttatttattttttttgctgtactgATATCAGTTAAATTTGTATTTGGCATCATTTCTGCTCCTGTACAGTAAAAATGTTTGCCTATAAAGTGTATTAACAAATGTGCATTCTCAAATCAGTTTTATAAAATTTCATCTTtgaaaagagaatgaaaaaaaaaaaaaaaaaaacattattataagggagcatccattttttttttttttttaaaaaagaagtatTACTTTCTGCTCTGGCATTCTTACACTTTCTGTCGCATAATTTTGTAACGGCGAACAGGGTCAAAGTTATGCAATAATGACGAGTGCCTAATATATTATACACGAAGCACATGCAGAAAGGCAAAAGATGCCATAAGCACAAAAGTGCATCCGGTACCAATAAACCTGTACAAAATACCCAACCTAATGTACAGTACCAAGCCTGTTTGTAATGCACTGAGCCTTACGGACCATTTGAAgacaacattttaaatgaaagctgTGAACATCCGCCCATTAATCACATAGTGAGCAATGCTGTATGTGTCTCCTTGGGAGGATTTGGATGGATATACCTTACACTTACAATATCAACTTGACTGAAGGACACAGTTTCTCCATTATTAAGGTTGACTTTTACCTCTTTGATATTACGCAGACCAGAATTTGAGTATGAGGCATCCTTACAGCTAAATCTGGTGCCTACAGAGTGGACCTACAGCACAAAAAGACGATGTCGCTTTGTAATTCCTCTGTGAATGCTCGTTTCTGATTTGTATTCAACTTATTCTGTACAGTATTGCCTCAGTTTCAATATCAACTTCATTTCTTAATctaaatatttactttattttgtctttttttctgatattCTGTGATTATCGTTCTTGTATTtatgtatagtgtatgtgtattgtaaatatatatttcagagCTTTTCATTTTGTGACATTTTGCCCTGCTTTGCTTCAAAGGGAATCCCTTCACACTGAATCCTATCACAGAATGTCTTCATTTCAGATAAGAAGAAAagtgtttattctttattttaattctccAGAAGGTGTCTAGATATTATGTGCTTTTGGGTTTCTCtgtagtttcattttatttgctaAAGATTGAGCTGTGAATTTCAGTTGAGTTTTAACATGATACATGTATGATAATCTAATCGGAGGCATGGAAGTTAATAAAGTTGCATTTTGTATGGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94834 lncRNA downstream 609980 9775806 ~ 9777389 (-) True G79903
TU94864 lncRNA downstream 614092 9772634 ~ 9773277 (-) True G79933
XR_003402716.2 lncRNA downstream 620793 9764485 ~ 9766576 (-) True LOC113525888
TU94854 lncRNA downstream 629200 9757930 ~ 9758169 (-) True G79923
TU94851 lncRNA downstream 631404 9755741 ~ 9755965 (-) True G79920
XR_004578184.1 lncRNA upstream 196377 10621537 ~ 10622344 (-) True LOC117597353
XR_003402728.2 lncRNA upstream 293974 10719134 ~ 10721674 (-) True LOC113526087
TU95462 lncRNA upstream 347228 10772388 ~ 10775221 (-) True G80463
TU95463 lncRNA upstream 350882 10776042 ~ 10776341 (-) True G80464
TU95531 lncRNA upstream 484013 10909173 ~ 10931379 (-) True G80526
XM_026912437.2 mRNA downstream 48869 10230762 ~ 10338500 (-) False dachd
XM_026912436.2 mRNA downstream 48869 10230762 ~ 10338500 (-) True dachd
XM_026912346.2 mRNA downstream 223072 10097231 ~ 10164297 (-) True clybl
XM_034304436.1 mRNA downstream 312531 9915517 ~ 10074838 (-) False si:ch211-168k14.2
XM_026948057.2 mRNA upstream 27837 10452997 ~ 10483869 (-) False tbc1d4
XM_026948049.2 mRNA upstream 27837 10452997 ~ 10483869 (-) False tbc1d4
XM_026948040.2 mRNA upstream 27837 10452997 ~ 10483869 (-) True tbc1d4
XM_026948065.2 mRNA upstream 27837 10452997 ~ 10483868 (-) False tbc1d4
XM_026948082.2 mRNA upstream 27837 10452997 ~ 10461626 (-) False tbc1d4
TU94731 other downstream 732914 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 818249 9568555 ~ 9569120 (-) True G79826
TU94713 other downstream 855701 9528304 ~ 9531668 (-) False LOC113525856
TU95376 other upstream 183153 10608313 ~ 10609042 (-) False LOC113526229
TU95628 other upstream 544257 10969417 ~ 10971157 (-) True G80600
TU95687 other upstream 593119 11018279 ~ 11035561 (-) True G80656
TU96948 other upstream 2288039 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 2288039 12713199 ~ 12716669 (-) False hspbap1

Expression Profile