RNA id: XM_026912749.2


Basic Information

Item Value
RNA id XM_026912749.2
length 3224
RNA type mRNA
GC content 0.43
exon number 6
gene id mfsd9
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11748026 ~ 11756862 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAAACGCGGTGCAGCTTACGTGTTGACTGCGGCGGGATGTGAGCAGGAGAATGAATCACTCTGAATGTAATCATTTTCACAAACCTAAGCGATCCGCACGGATTATAAAATGCATATACATAGTCGGGTTCATGgaccTCTTTGGGGTCAGTATGATCATCCCTCTACTGAGTCATCACGTGAAGGCATTAGGGGCAAGCCCGATAGTCTCTGGAGTAGTGGGCTCCACTTATGGGGTTTTACAGCTTTTCTCCAGCACTTTAGTAGGCAGCTGGAGTGATGTAGTGGGGAGGCGCTTTTCTCTCCTGACCTGCCTTCTGCTCAGTGCGTTTGGATACAGCCTTCTGGGGATGTCCACTTCTATTGCCCTGTTTGTGCTGGCCCGAATACCAGTGGGGCTTTTTAAACACTCCTTGTCCATATGCCGAGCTCTTCTGTCAGATGTGGTGTCGGAGACAGAGCGCCCTCTGGTGATGGGTCACTTTAATGCAGCTTCCAGTGTGGGATTCATCCTGGGCCCAGTGGTAGGAGGCTACCTCACTGAGCATGAGGGAGGATTTTATATGTCCTCCTTTGTCTGTGCAGCTATCTTCCTCCTTAATGCAGGTTTGGTCTGGATGTTGCCCTGGAGTGAGATTCTAAACCAACGTTTAGATGCTAACAGGAACAGTAAAAGCAGACAGCCCTATGACGGGCTGAGAAACTGCGATGGGAACCATGATGGTAGTTGCTCTACCACTAAAACTCGTCATTCTGCTGGATCTCTGGGCAAAGACTGGGGTAATATGGCTCTACTCCAGCTGACCTCAGTAGGAGCACAAATCCGCATGGTGGCTTCTTCTGACATGTGGGATGTGTTTCTGGTTCGCCTACTAATGGCGCTGGCAATCATGCTTTACCACAGTAACTTCTCTCTGGCCATGGAGGAGCGCTTTGATTTGAAACCCAAAGTGACAGGCTACATGATCAGCTACAGCAGCATGCTGGGTGCACTGGCTGGGTGCCTGGTGGGACCTATGACTCGTCTGTACAGAGGCAATATGTCTGCCCTGCTGCTGCACTCCACAGCGTTCACATGCTCATTGATCTTCCTATATGCCGCAGCAGGCAGCGTCTGGCACGTGCTGCTCTCCTCCACATTCTTTGCCATCTCTACCAGCGTGGGACGTACCTGCATTACAGACCTGGAGCTGCAGCGTGGAGGCAGTGCAAGGGCCAGTGGCACCCTGATTGGGGCAGGCCAGTCAGTGACGGCAGTGGGGCGCATACTGGCCCCTCTGCTTTCTGGCCTGACTCAGGAAATCAGCCCATGTGGGCCACCAAGCCTTGGGGTGCTGCTGGCTCTCACAGCTCTGGTGCTACTGCTTGTCAGGACTCCAAAGGGGGCTAAGATGAAGGACAAGAATGCCAAAGAGTGATTGGAAACAGGTTCAAAGCCACACAGATTTAAGAGAACAAGGGGCATTGTGGTGGATGTTGAAGTTGGCAGTTATCTGAGTATGAAGTGAATAGGTTTTTGGAAATGTATGGTCTAGGTAGGATTGGTTTGCTCTTGGAGCAATTGCAGCAGATGTGATCACCACCAGACTAGCCACCTGTTCCTCTATACACACACCAGGAGGACCTACCAAACCAAAGCAAGGCTCTGAGACAGATCCATATCTGATACGACTACTTACAGAATTTCTTTcgagtgtttgttttttgtgctgGTCATGTAAGTTTAGACAGTGTAGAAGTAGAAGATGGAAATTCTGTGCATAAGGTCTGGTTCTAGTAGCTGCTCCTTTTTGTTACCACTTAGTTTAAATTGATCCTTTTTATCAGTAGAAAATTGAagtgttcaaatatttattacCCAGAAATAGTACGGTGGTGCAGCAgttagcattgctgcctcacagctccagggtccctggtttgttTCTTgtgctcaggttactgtctctgtgaaGTTTTTCATCGTCTCCACATGTCCATGTTGATTTCCTCTTGGTTtactcccacctcccaaaaaacatgtttgTGCATGGTGCAGGGTACCAGGGAATggcctggcatcccatccagggtgtatttctgcctttgcccagtgttcctgggataggctccggatccaccatgaccctgaccaggataaagcaggtactgaaaatcaataaatgaaagaatgctGTCAGAGTAAAATACAAAGTATTAGGATGGTTACTATAGTACCTGTATGTAAATTAAGCTGAATATTTTAGGAATACacccctttttttaaattaatgttttgtttttgtagtgtTTGCTAGAATTCAGGTATTATAAACAAGGCTAAAGGAAAAGACACATTAATGAGCTAAAGAaagatgataaatgataatcaATCTCTGATGCAATAGTTGGTGCACTGACTTGGTTTCAACCTTGGTTTCATTTATATTAGGTTGTTCCACAACATATCATACaggaaaatgttaataaaaaacattcttgtattatattacatttaaaaacacactaaatTATCTGTTAACATGGAAAATCAAATAAACTGTAGTTTACTGTTTTCTAGATCGgtttcaaataattaaaattcagtAATATACACACTCAGTGgcattattcatcaaagttgcaCATGGTCAAATCTGATCGTAAAACAAGCATACACTAAATTCACTCATGGCGGTTTTTTCATCAATTTCGTCTTctatttatttgtacagtgaaaCTCGTGTCTGGTTAAAGTACATATACATTTGAGCGTAACAGCAACTTGAAAAATGCATGATTTGcagttaaataatcaaaaacaaaatcgTCACTATTTACAGCAAGTAGCCTGTAGTAAGTACAGTAGTATTGGtagtaacaataaaaaattaataatgttaataatcacCATGCAGGAACCTTGTACTTAAATGTAGGTAATTTATGAATGTGGATCAGAATGCACAGACATGGATCTTCATCAGCTCATTATCCTTTTAACTGAGCAGTAGGTGCATTTGTGCaatatgtgtgttttcatgttattacataattttataACACTTTCACATACACATATCACGTGTGTACAGATATcacattaaatgaaatgttctttatATCTGACTTATTTGAGttctaaaatgaattttaaaaatagccaTAAAAAGAGTTCAAATACCTACAGAGAAACGGTTCAGTTTCACTTCTACCAGATTTTGACCTtaggcagaaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96157 lncRNA downstream 58058 11688535 ~ 11689968 (-) True G81014
TU96155 lncRNA downstream 60784 11686981 ~ 11687242 (-) True G81012
TU96130 lncRNA downstream 102040 11645391 ~ 11645986 (-) True G80995
TU96117 lncRNA downstream 145868 11601908 ~ 11602158 (-) True G80988
TU96090 lncRNA downstream 187440 11560380 ~ 11560586 (-) True G80972
XR_003402757.2 lncRNA upstream 3589 11760451 ~ 11763694 (-) True LOC113526311
TU96223 lncRNA upstream 3628 11760490 ~ 11763719 (-) False LOC113526311
TU96345 lncRNA upstream 88014 11844876 ~ 11857267 (-) True LOC117597344
XR_004578180.1 lncRNA upstream 90256 11847118 ~ 11857114 (-) False LOC117597344
TU96413 lncRNA upstream 284772 12041634 ~ 12045475 (-) True G81220
XM_026911292.2 mRNA downstream 10282 11710608 ~ 11737744 (-) True LOC113524909
XM_026913038.2 mRNA downstream 46993 11698385 ~ 11701033 (-) True LOC113526203
XM_026912502.2 mRNA downstream 50290 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_026912501.2 mRNA downstream 50290 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_034304672.1 mRNA downstream 51974 11692405 ~ 11696052 (-) True si:dkey-4e7.3
XM_026912621.2 mRNA upstream 131006 11887868 ~ 11895080 (-) True fhl2a
XM_026912597.2 mRNA upstream 209632 11966494 ~ 11995666 (-) False uxs1
XM_034304859.1 mRNA upstream 209632 11966494 ~ 11995666 (-) False uxs1
XM_034304858.1 mRNA upstream 209632 11966494 ~ 11995666 (-) True uxs1
XM_026912464.2 mRNA upstream 258583 12015445 ~ 12049701 (-) True st6gal2a
TU95687 other downstream 712465 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 776869 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1138984 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2093571 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2178906 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 956337 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 956337 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 2795589 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 3070924 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 3306563 15063425 ~ 15077195 (-) False dcaf6

Expression Profile