RNA id: XM_026912773.2


Basic Information

Item Value
RNA id XM_026912773.2
length 1915
RNA type mRNA
GC content 0.48
exon number 4
gene id vgll3
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15945570 ~ 15948341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGATTCTCTATTTTGATCTCCGAGCTGTAGGTGGTGAATCCTCGACTGGAAACACTTTTTGTATGCaaatttttccttttccacaCTGCAGCGCTTTTGTTGACGCTCAGGTTTATAAAGAGAGCAGTGATGACACCAGCAGTTATTCGTCATTAAGGAGCCAGCCACGGCCGCTTTTCTGAAAACCTCTCGAGATTACTGACAGCCTTCTGCCATGAGCTGCCTGGATGTTATGTATCAGAATTATGGAGCTCATCATTACATGCCAGCgacggcagcagcagcagcctatAAAGCGGCATACTATCATcatcaccagcagcagcagAAAAAGTTCAGTGCATACAGCAGGATGCAGGACTTTGCGGACTTGCCTGCACACTGTGTCCAGAGTAAACAGGCTGAGAAGCCCAGACCTGAGACTGAATTGCAAAGAGATGATGACGAGCAGCatggtgaggaggaggaggtgaggtCTAAGGATTCACAACCAGCTGAGACAGAGTACCTGAGCTCCAGGTGTGTGCTCTTCACATATTTCCGTGGGGACATTGGCGATGTGGTGGATGAGCACTTCTCCCGTGCCCTCAGCCAACCTAGTGCCTTCAGTAATGACACCAAGAGCATTAGGCTCCCATCTGGAGGACTATGGAAAGATGGCAGTTCTCTCTGCGAGAGTCAGAGCGGCTCTTTGCCGTCTTCGTTATGGAACAGTAGTTATCCATCTCAGACCAACGCCTGCATCCCCTCCGTTCACAGTGATTTCCCTGCAGCTGCTGCCTTCCACACAGCAGACACTGGCATTTGGAGTGGCCATAGCCTGACCCAGCCTGGCCTGCCCCCTCATTCAGCCCTCACTGACTCATGGCCCTATGGCCTGGTTGGCCAAAGCAGCGCCGGACACCATCATGTCCATGACATGTACCCTCATATGCACCCACGCCACCATCATCCCCACCCTCATGCCCATCCCATGCTCCATCACAGCCACAGCAGTGCACTGGACCATCGCTTCAGTGCCCTTCTGTTGCCTGGGATGAGGGCATCGAGTAGCCCTTCTTCTAATACAGAGGGAATCAAGACAGAGCTGGAGCCTGCTGCCTCTAGCTGGCCAGCATCCTTCCATGGCTCTGTAGATATCTATGACACAGCACAGGAACAGGACAAAGCAAAAGCCAGTGTCTGGTTCTGAAACCGAGAAAGCCAGCCAGTGACACACAGCCTTGGAGTAGAGCAGCGCTGACATGAGCAATGTGAGATGGGCCAGAGTCTCACTGTGGAATCTCTCCCTGGAAAGCTTTCAGATTTCCTGGGAGTCGACTCAGGAAAGGAAACTTTGACTCCCTCCATTAGACAAGCCTAACAATAAACTTGGAGAAAAGCAACTTTCTGTAAAAGCAAACAATCCTGTCCGAGTTTGTGTATGATGAGAAGAGCGAGGCGTTAATGAATTCGGCCAGAGTGCTGTCCCACCTGGCTCTCACAGAGGGAATGCAATGACGGAAGCCACTTAAATGTATCCAAGTCTAAGAGGTATATTTTTCCTACTTTTTGTAAACCACGTTGAACATTTCCTGTTTGGTGGTTTGTGATCAGGAACAGAAGCATAAGCACATACCACTGGTTTTGTTGAAAGAACTGCCTGTCTCGTTTCAAATGAAGGCCAGTTTTGTGTTAATGTGGCtataaatatgtgaatgttTGAGTAGCAGCCTTGTTCAAATAGAAGTTttactttaatatattttgtctATGGTCTTGTGATCTACAGATTTGACAGTTCTGTAAGAAATTTGTGCAAATTGTTTCTACCAAAGTGTTACCTGTTTTGTTgcattattttgacttttgaATAAGAATGTAAGTGTTTTCGAtgctaaatactaaataaattgCTAAGTTCTATTGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98904 lncRNA downstream 5514 15939499 ~ 15940056 (-) True G83309
TU98901 lncRNA downstream 5514 15939599 ~ 15940056 (-) False G83309
XR_003402738.2 lncRNA downstream 22361 15920967 ~ 15923209 (-) False LOC113526197
TU98894 lncRNA downstream 22391 15920825 ~ 15923179 (-) True LOC113526197
TU98850 lncRNA downstream 58195 15830129 ~ 15887375 (-) True G83270
TU98939 lncRNA upstream 20477 15968818 ~ 15969346 (-) False pou1f1
TU99071 lncRNA upstream 61615 16009956 ~ 16012207 (-) True G83446
TU99081 lncRNA upstream 77041 16025382 ~ 16026189 (-) True G83456
TU99082 lncRNA upstream 82193 16030534 ~ 16030743 (-) True G83457
TU99102 lncRNA upstream 124056 16072397 ~ 16072684 (-) True G83473
XM_026909849.2 mRNA downstream 37139 15906927 ~ 15908431 (-) True kctd4
XM_026911892.2 mRNA downstream 52598 15864043 ~ 15892972 (-) True tsc22d1
XM_026911899.2 mRNA downstream 75346 15864043 ~ 15870224 (-) False tsc22d1
XM_026911906.2 mRNA downstream 78147 15864043 ~ 15867423 (-) False tsc22d1
XM_026910919.2 mRNA downstream 115552 15779527 ~ 15830018 (-) True enox1
XM_034304766.1 mRNA upstream 19603 15967944 ~ 15973914 (-) True pou1f1
XM_026911637.2 mRNA upstream 51336 15999677 ~ 16009824 (-) False zgc:152951
XM_026911632.2 mRNA upstream 51336 15999677 ~ 16009824 (-) True zgc:152951
XM_026911620.2 mRNA upstream 67848 16016189 ~ 16024344 (-) False acod1
XM_034304534.1 mRNA upstream 67848 16016189 ~ 16024342 (-) False acod1
TU98290 other downstream 868375 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1108177 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1392111 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3217545 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 271623 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1079966 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3532779 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3620410 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4278387 20226728 ~ 20237615 (-) True G85848

Expression Profile