RNA id: XM_026912782.2


Basic Information

Item Value
RNA id XM_026912782.2
length 3516
RNA type mRNA
GC content 0.45
exon number 23
gene id tlk1a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17002118 ~ 17025530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtggtgagtgtgagtgtgtgtgtataggataTGCACAGGAACATCGCCATAGTGTCTCACCGCTGCACACGGGTGACTAGTGACGCTTGTGATTTTCACCTCATTCTCTCCACCAGACGCAGTGCAGAGCCGCGTGAAGCTTTGATGAGTGTCCAAAGTAAGTGGAAGTGCTGGAAGTTTGGAGGAGGGGACGCCATCTTGGTCCCGGCTCTCCACGTCCCCAACACCACGGCTGCTTTCTCAGCAACACGGCGCGACTCTGCTTGAGGCCAAGCAAGGTGCTATGGATGAGCTGCAAAGTCTGGATCCGCGCCGGCAGGAGCTCCTGGAGGCACGTTTTATGGGCGGCATCAGCGGCAGCACAGGCAGTACTGGCAGCACCAGTGGAGGAACCAAGGCCTTAACAAACAACGAATGTTCGAATCATAGCTTTGGCAGTCTGGGATCTTCCAGCGATAAGGAGTCAGAGGGTTCTGACGTAAAAAGAGGCAGTTCTCCTGCATACTCAACCCCTGAAAAGAAACACTCTGAGTCATccagaggaagaaaaaggaaagctGAGATTCAGTCAGAGAGCAGCCAAGGGAAATCTATCGTTCGGGGAGCCAAAATTAGTGACTATTTTGATATACACGGTGGTAATGGGTCCAGTCCTGTTCGAGGGCTGCCACCAGTTATTCGCTCTCCCCAGAACTCACATTCCCACTCTGCACCAGGATCTAGTGTCAGGCAAAACAGTTCATCACCCACCAGTCTGACTTTTGGGGACCACATGATGCACCCTAAACAGTTAGCAGTAAAGAGTGTTCAGACTGAGCTAACCATGTTGAAGCTGGCTGCTCTGGAGAGCAATAAGAACCTAGACCTGGAGAAAAAGGAGGGCAGGATAGACGACTTGTTACGGGCAAACTGTGATCTCAGGAGACAAATAGATGAACAACAGAAACTACTTGAAAAGTACAAGGAACGCTTAAACAAATGCATCAGCATGAGCAAGAAACTCCTCATTGAAAAGaGCACGCAGGAGAAGCAGGCATGTAGGGAGAAGAGCATGCAGGACCGTCTGCGTTTGGGACACTTCACCACTGTAAGACACGGGGCCTCATTTACTGAGCAGTGGACAGATGGCTACGCCTTCCAGAACCTCGTCAAACAGCAGGAGTCTATAAACCAACAGAGGGAGGACATAGAGAGACAAAGGAAGTTGTTAGCCAAGAGGAAGCCTCCTTCAGCCAGTAACTCCCAAAGCCCCAGCGCCAACTCTGAGCAAAAACAGCGCAAAACCAAGGCTGTTAATGGGGCCGAGACTGACCCCTTCCTTAAACCCAGCTTACCTCAGCTattaACTATAGCCGAGTATCACGAGCAGGAGGAGATCTTCAAGCTACGTCTTGGCCATCTCAAAAAGGAGGAGGCAGAGATCCAAGCTGAGTTGGAGCGCTTGGAGAGAGTGCGGAATCTTCACATCCGAGAGCTGAAGAGAATAAACAACGAGGACAGCTCTCAGTTCAAAGACCATCCGACTCTGAATGAACGCTACTTGTTATTGCATCTGCTTGGAAGAGGGGGCTTCAGTGAAGTGTACAAGGCTTTTGACCTTATTGAACAACGTTATGCAGCTGTGAAAATCCATCAACTCAACAAAAActggagagaggagaagaaggagaactATCACAAACACGCCTGTAGAGAGTACAGAATACACAAGCAGCTGGATCATCCACGAATAGTGAAACTTTATGACTATTTCTCACTGGACACAGACACGTTTTGTACAGTCCTGGAATACTGTGAAGGCAATGATTTGGACTTCTACTTGAAACAGCACAAGCTTATGTCTGAAAAAGAAGCTCGTTCAATTGTTATGCAGATTGTTAATGCACTACGATATCTGAATGAGATCAAACCACCTATAATACACTATGACCTTAAACCAGGGAATATACTGCTAGTAGATGGAACTGCATGTGGAGAGATAAAAATCACAGACTTTGGTTTGTCTAAAATAATGGACGATGACAACTATGGAGTGGATGGGATGGACCTCACATCACAAGGGGCTGGCACTTACTGGTACTTGCCCCCCGAGTGTTTTGTTGTGGGTAAGGAACCTCCAAAGATCTCCAACAAGGTGGATGTGTGGTCTGTGGGAGTTATCTTTTTCCAGTGTCTCTATGGAAGGAAGCCTTTTGGTCATAACCAGTCCCAGCAGGATATCCTGCAGGAGAACACTATTCTCAAAGCCACCGAGGTGCAGTTCCCAGTCAAACCTGTGGCCAGCAACGAGGCCAAGGCATTTATCCGACGCTGTCTTGCATATAGGAAGGAGGACCGGTTTGATGTGCAGCAGCTGGGCAGCGATTCGTATCTGCAGCCTCACATGAGACGCTCCAGTTCCTCTGGGAACCTGGCCTCAAGTCCGGCTCCTTCAAGTGTCATCTACTGACAAACtgcactgactcactgactgaacATTGTGCTGGCCCATCTCTGCTCTCCCTGCTCTCCCTGCTGCAGGAACCGGACAGGAGCCAAGCAGGCAGGGGACAAGCATGTCCTCAGATTGTGGATGCTGGAGATCGACAGTTGAATCTGGTGTTTGGATTTGGGCAGTTTGACCAATGGAAGTGGGATAGGAAAAGATCAAACTTTCATTCAGAAAGAGAgtgttgtgtaaatgttattGAAGCATAATGGCcttttaaaaattctataaaGCACTGCTCCATCTAAGTAACTTGAAAtgtgatatttcttttttttgtggcaGTTGCTTTGAAGGAATAGATGAAGACCTGACACCtaccataaataaatgaatgcagtCTCTGCCAGGTAAAATGATTGCAATGATGAAGTGATTTTTCTGGCAGGTATTTGCTACAGGGGCTTACATGCATACAGGAAGTCTCTAAGGTTTTCAGTATAAACTTGGCAGAGATATTTTGGATTTGGGGGAGTGTTAGCTGTTTTCTGTACAATTAGCAACGAGAATGTAATTAGCATATGTTGTGACGTAGTGTCACAATAGGGCCAAGCAGAATACTAATTTTGAATGCACAAAATAACCAAATGTAGAGAAATGACAATGTACAGAATCCTTatgcaggataaaaaaaaataaagatccCTTCTAGAAAATTAATGTATATTTGCTGTACAGGACCATACTTGCAGATATTAAATTTCAACAGATTAATTctgtacaaacttttttttgccGTTTTTCTTGTAAATCTGGTTTCCTGAAGTGTTTGCTGCTTTTatgttgctttttaaaaatggctgtatTGAACTACTTTGGGTACGAAGTGTACAGTTCTGTTGAAATTTAAAATGGTAATAAATGCCAGGTAATTATTTGTTGCCTCAGATTATATACTGTTCTTCTTGAAATAGGCATCTAATACTTTAATTTTCTTGCTATGGTTTGATGTTAATGCTCATCTACTCCAATTGCCCACCTAAAGTGTCATCTGAtgccattttaaacacacagacaaggagacgaa

Function

GO: NA

KEGG:

id description
K08864 TLK; tousled-like kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99680 lncRNA downstream 35945 16965511 ~ 16966173 (-) True G83953
TU99271 lncRNA downstream 592225 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 625832 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 773681 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 925498 16074499 ~ 16076620 (-) False lmo7a
TU99803 lncRNA upstream 101780 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 282039 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 298515 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 306962 17332492 ~ 17346350 (-) True G84189
TU99971 lncRNA upstream 346449 17371979 ~ 17373212 (-) False sp3a
XM_026911738.2 mRNA downstream 326851 16617571 ~ 16675267 (-) False mylka
XM_026911743.2 mRNA downstream 326851 16617571 ~ 16675267 (-) False mylka
XM_026911731.2 mRNA downstream 326851 16617571 ~ 16675267 (-) True mylka
XM_026910878.2 mRNA downstream 387935 16562674 ~ 16614183 (-) False fmnl2a
XM_026910888.2 mRNA downstream 387935 16562674 ~ 16614183 (-) True fmnl2a
XM_026911166.2 mRNA upstream 2707 17028237 ~ 17039813 (-) False mettl8
XM_026911173.2 mRNA upstream 2707 17028237 ~ 17039813 (-) False mettl8
XM_026911159.2 mRNA upstream 2707 17028237 ~ 17039813 (-) True mettl8
XM_026913150.2 mRNA upstream 26527 17052057 ~ 17071808 (-) True itga6a
XM_026913152.2 mRNA upstream 27908 17053438 ~ 17071808 (-) False itga6a
TU99188 other downstream 781252 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1924923 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2164725 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2448659 14552451 ~ 14553459 (-) False med14
TU96950 other downstream 4285449 12713199 ~ 12716669 (-) False hspbap1
TU99754 other upstream 2777 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 2455590 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2543221 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3201198 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4110516 21136046 ~ 21144621 (-) False phgdh

Expression Profile