RNA id: XM_026912837.2


Basic Information

Item Value
RNA id XM_026912837.2
length 4558
RNA type mRNA
GC content 0.47
exon number 27
gene id caska
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14619022 ~ 14759714 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTGGGTTTTGTGGAAGCAGAAAGAGCAGAGGAGCGGCAGGGCAGAGCGAAGCGGAGACACCCGGAGCCGCAGTGGAAAAACTAGGGACAGACAGCGAGTCCCGTGGGATAGCGGAAGCTATGAGCGCGGATATGCGATGAATATTGTCACTTAGCTGCAATTTTGGCAACCAGAGCGACTTGTTGTTGTAGAAGCGAGTCGGGGAGTAGTTTTGTGGCGGGTTTGGAAGGACACACAGCTCGACTGACACACTTAAACGCCGAGAGCTGTACATGTGGCGAGTTGTTTAGAAAGCTGATAAAAGCCTGAACCTGGCCGCGAGTTGGCTGGACGCGCCGGATTAATTCCAAGGAGTCGGGAAACAAGCATAAGGTGGGGCAGAAGAGTGAACTGAGGAGCGCGTCCACTCTGGCCGCCCCTTCTCTGTATTTTTAACTCAATCCCTCACGGACATTTTTCGGAGAAGAGAACGAAAAACGCCGAGATATTTTTTTTCCGCTCGCTGGAATTTGGGGAGCGTTCACAGGCGCCTGCTGTTTGGGCTCACGGGGAGCTCGTGCGCTTCAGAGTGTGAGATTTCCCGCCGTGGACACATTTCGGGCAGGAAATTGTCCCGTCTTGTTTTTGGACCATGGCCGACGACGACGTCCTCTTCGAAGACGTTTACGAGCTGTGCGAGGTCATTGGGAAGGGGCCATTTAGCGTGGTGAGGAGATGCATCAACAGAGAGACAGGCCAGCAGTTTGCAGTGAAGATTGTAGATGTGGCCAAGTTCACCTCCAGCCCTGGCCTCAGCACAGAAGACCTAAAGAGGGAGGCCAGCATCTGTCACATGCTTAAACACCCCCATATCGTGGAGTTGCTGGAGACCTACAGCTCAGATGGAATGCTCTACATGGTCTTTGAGTTTATGGATGGAGCAGACCTCTGTTTTGAGATTGTGAAAAGGGCAGATGCTGGGTTTGTCTACAGTGAGGCTGTAGCCAGTCACTACATGAGACAGATCCTTGAAGCACTGCGGTACTGCCATGACAACAACATCATTCATCGAGATGTAAAGCCTCACTGTGTGTTGCTGGCATCAAAGGAGAACTCCGCTCCCGTGAAGTTGGGTGGCTTTGGAGTTGCTATACAGCTCGGAGAGTCAGGATTGGTGGCTGGAGGCCGGGTGGGCACCCCCCACTTCATGGCTCCTGAGGTGGTGAAGAGAGAGCCGTATGGGAAGCCGGTGGATGTGTGGGGCTGTGGAGTCATCCTCTTCATCCTGCTCAGCGGCTGCCTGCCCTTCTATGGCACGAAAGAGCGCCTGTTTGAGGCCATTATCAAAGGCAAATACAAGATGAACCCTCGGCAGTGGACTCACATCTCAGAGAGTGCTAAAGACTTGGTGCGACGCATGCTGATGCTGGATCCTGCTGAGAGGATCACTGTGTACGAGGCCCTCAATCACCCGTGGCTCAAGgAGAGAGACCGATACGCCTACAAAATCCACCTGCCTGAGACAGTGGAACAGCTGAGGAAGTTCAATGCACGGAGAAAGCTCAAAGGTGCTGTGTTAGCAGCAGTTTCCAGCCACAAGTTCAGCTCGTTCTATGGTGACCCACCTGAGGAGCTGCCAGACTTCTCTGAAGATCCCACCTCATCTGGGGCTGTATCACAGGTACTGGATAGCTTGGAGGAGATCCATGCACTCACAGATTGCAGTGAAAAAGACCTGGACTTTCTGCACAGTGTCTTCCAGGACCagcatctacacacactactTGATCTGTACGACAAGATAAACACCAAGTCCTCCCCACAGATCAGGAATGCTCCAAGTGATGCTGTTCAGAGAGCCAAAGAGGTACTAGAAGAGATTTCCTGCTATCCAGATAATACAGATGTTAAAGAGCTGAGGCGAATCCTAACCCAGCCCCATTTTATGGCCTTACTGCAAACTCATGATGTGGTAGCTCATGAAGTATACAGTGATGAGGCACTGAGGGTCACACCCCCTCCTACCTCACCATATTTGAACGGAGACTCACCTGAGAGCACCAACGGGGACATGGACCTGGAGAACGTCACTCGAGTACGGCTGGTGCAGTTTCAGAAGAACACAGATGAGCCCATGGGTATCacgctgaagatgaatgacctGAATCACTGCATCGTGGCCAGAATAATGCATGGTGGCATGATTCATAGACAAGGGACCTTGCATGTTGGAGATGAGATCCGGGAGATTAACGGCATTGGTGTAGCTAATCAGACAGTGGAGCAGCTCCAGAAAATGCTTAGGGAGATGAGAGGCAGCATTACCTTTAAGATTGTACCAAGCTACCGGATGCAGCAATCATCTTGTGAGAAAGAGTCCCCTACCACCTCCAGACAGTCCCCTGCTAATGGCCATTCCAGCGTTAACAGTTCTATCTTGGACCTGCCATCAACCATCCAGCCAAAAGCACGCCAGATCTCCAGACCTACAATCAAGGGTAAAATATCAGTCAAGATCTATGTGCGGGCACAGTTTGAGTATGACCCAGCCAAAGATGAGCTCATTCCTTGCAAAGAAGCAGGCATTCGGTTCAGAGTGGGAGACATCATCCAGATCATCAACAAGGATGACCATAACTGGTGGCAGGGCAGGCTGGAGAACACAAAGAATGGCACAGCTGGGCTCATTCCATCCCCAGAGCTGCAAGAGTGGCGGGTGGCCTGCATAGCGATGGAGAAAACTAAGCAGGAGCAGCAAGCCAGCTGTACTTGGTTTGGCAAGAAAAAGAAGCAGTACAAAGACAAGTATCTAGCGAAACACAGTGCAGtgtttgatCAACTAGATCTTGTCACATATGAAGAAGTTGTGAAGTTACCAGCTTTCAAAAGGAAAACACTAGTGTTATTAGGAGCTCATGGTGTTGGCAGAAGACACATCAAGAACACACTCATCACTAAGCACCCTGACAGATTCGCTTACCCCATTCCACACACAACCAGACCTCCTAAAAAAGATGAGGAGAATGGCAAGAACTATTACTTTGTATCACATGACCAAATGATGCAGGACATTGCCAACAATGATTACCTGGAGTACGGCAGCCATGAGGACGCCATGTATGGAACACGGCTGGAGACGATACGCAAAATCCACGAGCAGGGCCTCATATCTATACTTGATGTAGAGCCACAGGCGCTGAAGGTCTTGCGAACAGCAGAGTTTGCTCCTTATGTGGTTTTCATTGCTGCACCAACAATCACTCCGGGCATGAATGAGGATGAATCACTACTGCGACTGCAGAAGGAGTCAGAGATCCTCCAGAAGACCTACGCACACTATTTTGACCAGACCATCATCAACAATGAGATCGATGAGACGATCCGGCACCTGGAGGAGGCTATAGACCTGGTCTGCACTACAGCACAGTGGGTTCCTGTGTCCTGGGTCTACTAGAACACCATTAACTCTCCTCAAACTCCACCTTAAAGTCCCAGACTCTCTGTGATGccaaaaaaatagataaaaataaatacgtacataaataaataattaagaaggaaagaaaaatcacCACCATTCCCTGGAGAAAGGATCCACCTCCGATTTGTCTGATGTGCAGTGCACATGACCCGCAGACAAATCCAATCTCAGCCCTTCAGACTACGTAGATGTAGTGTTGTATAAGATATAATAATACAGTTGTGAATATTGACACGTCCTTATTGATGAGATGCAGCattttgtagagttttgatttAAAGAGACAGTATCTTAAATATTTTCTGCTCAGACAGAGGAACAGCAGACATGTTGCATCAGTGCGTCAACACATTATCCATTCAGGGCTTATGTATCCTTCAGCCGCTATAAAACACCCCTCACTGGAACCCATTAGTTTCCCTGTGTATCACAGTCTGCTGTTTAACCACTTCCAGATACTGTCTCTCTAAACAAGTCTATACCTCTGAGATCTGAGTTCTCATGCATGTGAACATTCAGAGACTTGCATACTGTCAGTGTTAGCAGTGTAACGCTACTGTTATCCACAGCACAGAACATTCCATATGTCTGGACAAATTCAGACCAAGTGAAGACCAGTGGagaatgaagatgaaaaaaagaccTATGCACATCTTTGGGCACATGGGGACATTTCGGACAGCTTTCTAACAAATTCTTTTTACCAGCCATGTAGTGAGATGTGTTAATGTCTCAATTTaatttgttgtaaaaaaaaaaaaaaaaaaaaaatcctggagataaaaaaatgacagaaaacacaAGCCTATACTGGTTTCACCATTATAGAAATGTGTCATCAGAGAGTATTAATGTTTTCATAAAGCTGAATCAAAAGGGgaaacagatttttattcaGTGTAACTGTTTCAGACAGAGGTGCACACATAGATACATTTTGCAAAATGAACtgtgttgcaaaaaaaaaaaaatctgaatgatTCTGTATATGACAAACTGTTTACTTCAGACTGCCCTGTGTAAATTCCTCTGCTGATGACTGAGCAGCTCTTCAGTAtgaaccattttttaaatatatttccttTTCTGTGGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98125 lncRNA downstream 14007 14601745 ~ 14605015 (-) True G82756
XR_004578237.1 lncRNA downstream 265082 14341038 ~ 14353940 (-) True LOC117597393
TU97953 lncRNA downstream 323212 14293937 ~ 14295810 (-) True G82604
XR_004578251.1 lncRNA downstream 667189 13945298 ~ 13951833 (-) False LOC113526223
XR_004578250.1 lncRNA downstream 667190 13943807 ~ 13951832 (-) True LOC113526223
TU98251 lncRNA upstream 160036 14919749 ~ 14920280 (-) True G82849
TU98260 lncRNA upstream 211965 14971678 ~ 14971897 (-) True G82858
TU98263 lncRNA upstream 231503 14991216 ~ 14991486 (-) True G82861
TU98266 lncRNA upstream 242821 15002534 ~ 15004759 (-) True G82864
TU98371 lncRNA upstream 325650 15085363 ~ 15105616 (-) False G82904
XM_026913021.2 mRNA downstream 24528 14591717 ~ 14594494 (-) True rpl8
XM_026912678.2 mRNA downstream 65527 14538868 ~ 14553495 (-) True med14
XM_026912679.2 mRNA downstream 65528 14538868 ~ 14553494 (-) False med14
XM_026912499.2 mRNA downstream 81831 14534411 ~ 14537191 (-) False si:ch211-218d20.15
XM_026912145.2 mRNA upstream 34193 14793906 ~ 14824547 (-) True mao
XM_026909636.2 mRNA upstream 67962 14827675 ~ 14837409 (-) True ndp
XM_026948095.2 mRNA upstream 82787 14842500 ~ 14851402 (-) False efhc2
XM_026948104.2 mRNA upstream 83028 14842741 ~ 14851402 (-) True efhc2
XM_026947519.2 mRNA upstream 94031 14853744 ~ 14857520 (-) True fundc1
TU98093 other downstream 65563 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 1890997 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1902353 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 3583461 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 3647865 10969417 ~ 10971157 (-) True G80600
TU98227 other upstream 68073 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 303712 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 1460251 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 2268594 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 4721407 19481120 ~ 19487739 (-) True grb14

Expression Profile