RNA id: XM_026912877.2


Basic Information

Item Value
RNA id XM_026912877.2
length 2289
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC113526085
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10693861 ~ 10717168 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAAAGCCACGGTATAATGATTGACAGGCTCATTCAGGTCCTGCATGGTAGACAGGCACACCCCTCATGCGGTGAGGTGCTGGAGAAGGGTTTACATGAGAGGGTTGGTCTTCTGCCAGGGAAGGTTAGGCACATCACTGATAACACACAGCTATCAGAAGGATTCAAGCTTGACGACAGggcgaacgcttttctgttgtgccactaattgttttaattttaattctacatttgcacattttataaAAGTTATACCAAACTGGGTTTTATTGATTAGGGTCAACTTTTGAGGCTCTACCAGGGAACGCACTACACCTATTCACTAGCTGCCCTTCCAAACCGGATTTGCTTGACTGACTGGTTCGATGGTTCAAGTTGTCCTTAGTGTGATTTGCTGAAGATTAACTGGCACTGTGTGCTGTGATCGTCACACCCAGTcatgcagaaacacaaacacagattgCTGCTTATCTTTATTCTATTGGGATTTATACTGCTCATTTGCAGCATGATATTTATGGAGAGGAAAATGCAGAAGAACTCATCCATTAAGCCTTCTGAAATCTTCAGGCCGCTGGAGGTAACCCACATTTACTGTGCAAACTTTGGCCAGGAGCCCACAGCAGAAGAGGCCAAAGAACAGAGAGATCTGCTCAATTCCATTGCATGGCCAGGTCCCTTGGTGCAAGGCCTCCCTCTGGAGCTCAGTAGCAACCCTTCTAAGAGCTACTTTGTGATTCAGGGCCCAGCAGAGCAACACATAGGCAGTCAACTTGTGGTTCATGTCCATGTGCAGAACTCTTTGGGTGCGAATAAGGATCACGGTGGAGATTTCCTGATAGCTCGGCTGCATTCACGTGAGCTGGGTGCTGGAGTTGCAGGGAAGGTGCACGACCACCATGATGGCAGCTATACAGTGCTGTTCCCACTGCTATGGGCTGGTGTAGTGCAAGTAGAAATTATGATGGTGCATCCGAGTGAGGCAGTGGCAGTGCTCAAGAGGTTGCAGGAGGAGCAACCAGacagaatattttataaaagcCTGTTCCGCTCTGGTGCCCTCTCAGAGACAACCTTCTGCAATCTGTGCCTGCCACTCAACAAGAAACCACTCTGCAACTACACTGACCCTTCAACTGGAGAGCCCTGGTACTGCTATAAACCCAAAAACCTAGGCTGTGACACACGAATAAATCATGCTACAGGGGGATATACAAAGAACCTCATTACCAAATATGAAGCACAGTTCTTCCAGAGtggTGTAAATCTCAAAGTTCCTATACCTGCATCTGCGATTGACAAAGTGACTGTATTACCTGCAGAAAAAGGACAAGccaaagtaaaaaataattacaatactGCTGGCTACTACTTTCATGATACCTGGAGGTCTTTGAATGGTGCAGTCATCCAGCAGTTTAATGACTCTTCAGCCATAACACATTGTCTTAGAGGGAAGATTGTGTACATGCTTGGAGATTCCACTTTGCGTCAGTGGTTTGAGTACCTCACTGCTTTTGTTCCTGACCTCAAACAGTTAAATCTTTACACTCCTAAGAGAGTAGGGCCATTCATGGCTGTGGACAGCACGAACAACATTCTGGTGAGCTACCGCTGCCATGGGCCGCCCATCCGCTTCACCCCAGTGCTCTCCTCTGAGCTGCACTATGTAGCAAATGAGCTAGACAGGATACAGGGTGGGCCGGACACAGTCGTTCTTGTGAGTGTGTGGTCTCACTTCAGCTCCTTTCCTATTGAGATGTATATACGGCGCCTCCGGCACATCCGCAGGGCCGTGGTGCGGCTGCTGAACCGTGATCCAGCTACCTTGGTGGTGATCCGCACTGCCAACCTGCAGAAGCTTGACCCAGAGAACAGCCTGTTCAATAGCGACTGGTTCTGTCTGCAGATTGATGCTGTGCTGCGTGCCATGTTCAGAGGACTCAATGTGCAGATACTTGATGCCTGGGAGATGACGCTGGGCCACCACCTACCCCATGACCTACACCCACCCCGTGCCATTATCAAAAACATGATTGATGTGATCCTCTCCCATATTTGTCCAGTTGGAAAAATATagaagtatgaaaaaaaaaaattaattgtataTCAATTCCCACAGCAATAAATGAACATCCACTTCTGAAAGTAATATGGAGAATAAGCACTCATATGAGTTAAATGctcagatctgattggtcagtaggtgtgcattatttttgtacaggtagttctggctgcaatgaacgataggttaatattaatgcacctgttctaatgcattattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578184.1 lncRNA downstream 71517 10621537 ~ 10622344 (-) True LOC117597353
TU94834 lncRNA downstream 916472 9775806 ~ 9777389 (-) True G79903
TU94864 lncRNA downstream 920584 9772634 ~ 9773277 (-) True G79933
XR_003402716.2 lncRNA downstream 927285 9764485 ~ 9766576 (-) True LOC113525888
TU94854 lncRNA downstream 935692 9757930 ~ 9758169 (-) True G79923
XR_003402728.2 lncRNA upstream 9438 10719134 ~ 10721674 (-) True LOC113526087
TU95462 lncRNA upstream 62692 10772388 ~ 10775221 (-) True G80463
TU95463 lncRNA upstream 66346 10776042 ~ 10776341 (-) True G80464
TU95531 lncRNA upstream 199477 10909173 ~ 10931379 (-) True G80526
TU95626 lncRNA upstream 259946 10969642 ~ 10971079 (-) False G80600
XM_026946536.2 mRNA downstream 4072 10675383 ~ 10689789 (-) False LOC113546580
XM_034304202.1 mRNA downstream 4072 10675383 ~ 10689789 (-) True LOC113546580
XM_026909792.2 mRNA downstream 48106 10635365 ~ 10645755 (-) True LOC113523755
XM_026912927.2 mRNA upstream 284353 10994049 ~ 10997825 (-) True LOC113526121
XM_034304559.1 mRNA upstream 398918 11108614 ~ 11128901 (-) False gdap2
XM_026911790.2 mRNA upstream 398918 11108614 ~ 11128901 (-) True gdap2
XM_026948141.2 mRNA upstream 491760 11201456 ~ 11220943 (-) True tbx15
XM_026912852.2 mRNA upstream 514658 11224354 ~ 11239811 (-) True wars2
TU95376 other downstream 84819 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 1039406 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 1124741 9568555 ~ 9569120 (-) True G79826
TU94711 other downstream 1162193 9528862 ~ 9531668 (-) False LOC113525856
TU95628 other upstream 259721 10969417 ~ 10971157 (-) True G80600
TU95687 other upstream 308583 11018279 ~ 11035561 (-) True G80656
TU96948 other upstream 2003503 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 2003503 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 3842755 14552451 ~ 14553459 (-) False med14

Expression Profile