RNA id: XM_026912977.2


Basic Information

Item Value
RNA id XM_026912977.2
length 1940
RNA type mRNA
GC content 0.52
exon number 9
gene id mbnl2
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18341416 ~ 18370653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCCCCTCCCCCTTTTCGACTTGGGAGCCCTTCCTGAAAAACAGAGTCAAGCTGTCAAATGCTTGTTGCTCGAAGGAAAGTCGGCgctagtgtttaaaaaaaagtatcgCATTAACCGTAAAGGACGTGCTCTCGCTTCAAATTGTGTTCGGACGATACGATGTTTAATAGTGCGTCGAGTTGTTTAATTTGATGTTGAAAATAAAGTGGTTAGTGTGTTCTCGCTCCCAGTTGGGCTGTGCTGGGTGGGTTGCCGTGGCGGTTCGTGACTGTCGGTGTGGCTAGCAGCGAGATTTCGTGGCGATGAGACCGTTATCAAGAAGTGCCTTTCAGATGACTCCCCGTGTCGCTGATCTCTGGTCTCTGCCTGCCTGTACCAcccacactcctctctctccacctcaGTCAGAGTACTAATCCTCCCACCTCAAACCATTCCTTTCTCCACCTGACTGCAGCATTCAATCCCACCCACAGCCACAGGAAGGCATAAAGAGGGGAGGAAATTATAAACTGAGCCTGCTGTCAAAGTAGTCAGAAGATCATGCTATGCAGGAACGTTACATTTCTTGAATAAAAACAGACGTTTGATTCACAATCTACCAACCTATTACAGTGTCCTTTCACAGTAAATAACTACGCCATACTCAGACATCCTGAACGTAGTGGATAAGTGCCCATATATCTCGTTTAGTGAGTTTCACTGTGGCTGTCAGCAAAATGTCTGTGGCATTGCCAGCTGTGCGTGACACTAAGTGGCTGACTCTGGAGGTGTGTCGTCAGTTCCAGAGAGGCACGTGCTCCCGCAGTGACGAAGAATGCAAATTCGCTCACCCACCCAAGAGCTGTCAGGTGGACAATGGCCGAGTCATCGCCTGCTTCGACTCCCTCAAGGGTCGGTGTTCAAGGGATAACTGTAAATACCTGCACCCTCCGTCTCACCTGAAGAGTCAGCTGGAGATCAATGGAAGGAACAACCTGATCCAGCAGAAGACGGCTGCAGCCATGCTGGCCCAGCAGATGCAGTTCATGCTGCCAGGATCCAGCTTGCCTGCTGTGTCTTCCTTTCCTGTTGGTCAGAGTCTGGGGCCAGGACCTGGGATCAGCTACTCCCCCTACCTCTCTCCTGTCACTCACGGGATGGGGCTGGTTGCCACGGAGATGCTCCCGAGCAACCCCGTGATTGTCCCTGGCAGCCCTGCAGTAGCAGTGCAGAGCTCAaactcctcttcctcatctcaGAAAGCACTGCGCTCTGACAAACTGGAGgtgtgtagaGAGTTTCAGCGGGGGAACTGCTCCCGAGGAGAGACAGACTGTCGGTTTGCCCACCCTAGCGACAGCCCCATGATTGACAGCACTGATAACACAGTGACAGTGTGCATGGACTATGTGAAGAGCCGCTGCTCCAGAGAGAAGTGCAAATACTTTCACCCTCCTGCTCATTTGCAGGCACGCCTCAAAAGCTCTCAAAGCAGCCAGAGCACTGCTGCAACCGCTGCTATGACTCAGTCAAGTGCCAAAGTGCTGAAGCGACCCCTCGAGGCAACTGTTGACATGgcGTTTCCTCACACCATGTTGCAGCCACTGGCTAAGCGAGTGGCTTTAGAGAAGAGTGCAGGGCCTGGTGGTCTATTAAACCCCAGTGTTCTTCACTACCAGCAAGCTCTCGCCAACACACCTCTGCAGCCTTCTACTGCATTGTTccctacagTTCCCATGATGCTCAGTGCCCCGCCTGCTACCGCCTCCGCTCCTGCTGCAAGCCCCTACGCTGCTGCCGCCGCGGCAACCGCCAATCAGATCATTTTGAAATAGAGCGCAGGAGGGGGACAGAGTGCCAacgcaacatacacacacttcttaaACAACGAGTGTGTGGATATAACATCCTCAACTCCACAGAATTACTGCTACATgcatgctgacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100817 lncRNA downstream 207767 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 209236 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 211161 18133402 ~ 18133689 (-) True G84880
TU100815 lncRNA downstream 212852 18131410 ~ 18131998 (-) True G84881
TU100258 lncRNA downstream 511261 17833375 ~ 17833589 (-) True G84411
TU100942 lncRNA upstream 169896 18540353 ~ 18555865 (-) True G84975
TU101041 lncRNA upstream 297534 18667991 ~ 18668211 (-) True G85069
TU101156 lncRNA upstream 542930 18913387 ~ 18915283 (-) False LOC113526313
TU101194 lncRNA upstream 667770 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 680941 19051398 ~ 19053050 (-) True G85211
XM_026912979.2 mRNA downstream 7640 18325407 ~ 18337210 (-) True LOC113526158
XM_034304397.1 mRNA downstream 31119 18261235 ~ 18313731 (-) True LOC113526154
XM_034304855.1 mRNA downstream 86625 18179194 ~ 18258225 (-) False zmp:0000001200
XM_034304856.1 mRNA downstream 86626 18179194 ~ 18258224 (-) False zmp:0000001200
XM_026912586.2 mRNA downstream 86628 18174996 ~ 18258222 (-) False zmp:0000001200
XM_034304773.1 mRNA upstream 2720 18373177 ~ 18379363 (-) False slc38a11
XM_026913030.2 mRNA upstream 2720 18373177 ~ 18379363 (-) True slc38a11
XM_034304772.1 mRNA upstream 2720 18373177 ~ 18379342 (-) False slc38a11
XM_026947055.2 mRNA upstream 98495 18468952 ~ 18497409 (-) True csrnp3
XM_026947069.2 mRNA upstream 98495 18468952 ~ 18481293 (-) False csrnp3
TU99754 other downstream 1305007 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 2123984 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3267655 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3507457 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3791391 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1110663 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1198294 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 1856271 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2765589 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2765589 21136046 ~ 21144621 (-) True phgdh

Expression Profile