RNA id: XM_026912979.2


Basic Information

Item Value
RNA id XM_026912979.2
length 2622
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC113526158
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18325407 ~ 18337210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTGCACTTCTTCCACACAGGCGTGGGTGCGGTTTGAAGCGCGTGGCCGCGCCTATCAGGCTCCCGTCGCAGCTCCATGCACGAGACGCTGATGACGTGCTTCGCCTGGCGCTGGCTACGGAAGCCGAGCAGGGGAAACGGGCGGTAACGCGGCGgcagcggcggcggcggcggtgCTTGTGGGTCTCCACCCGAGAGCATGGCGGCCGCGGATGTGTCGGTGCGCAGAAGAAGAGGCGACATGAAAACACAGACGAGGGACTGTTTTCTCTAAACTGCGAACATTCGCTTGCTTTAAAGACAATCTCGTGTTTATTTGCAGCTACGAGATTCCGGGTGAAGCTTTGTTAGCTTAGCCAATACCGCAGCTAATGTTACTCTGTGCAGGAGCAGCGCCGTTTTTGCCACTCGGATGATTTAGGACCGTGAGCTCAGCAAATGAAAGAGCCCGAGCTAGCTATCGTGCAGCAGCCTGGATTGCGGTAATAGTCGACGCCGGGCAGGATCGCGATAATGCACCGCTTCTTCTCCGTTTCCTTGTTCGGGCTCCGCGCCTTTGTGCGCCGCTTGTTTACTTCGCTTTGCTAAGAGCGAGAAGGGCGCCAGGAGCAGCATGGGAGCCGCTCCGTCACTGGCACTGTAGCTAAAACTCAGCTTTAGCCTTTTATTACGTGTTTTAAATGACGAATACCGGGTGCTAGTGCacgttttctgttgttttttcccctttaacgGTCCGTTAAGAGCCATGCGCGAGTATAAAGTGGTGGTGCTGGGCAGCGGCGGCGTGGGCAAGTCCGCCCTCACCGTGCAGTTCGTCACCGGCACGTTCATCGAGAAGTACGACCCGACCATCGAGGACTTCTACCGCAAGGAGATAGAAGTGGACTCGTCGCCCTCGGTGCTCGAGATCCTGGACACAGCCGGCACGGAGCAGTTCGCCTCCATGCGCGACCTGTACATCAAGAATGGCCAGGGCTTCATCCTGGTGTACAGCCTGGTGAACCAGCAGAGCTTCCAGGACATCAAGCCCATGAGGGACCAAATCATCCGCGTGAAAAGGTATGAGAAGGTGCCGGTGATCCTGGTGGGCAATAAGGTGGATCTGGAGAGTGAGCGGGAGGTGTCGGTGAGCGAGGGTCAGGCTCTGGCTGAGGAATGGGGCTGCCCCTTTATCGAGACCTCAGCCAAGAGCAAGACCATGGTGGATGAACTGTTCGCCGAAATCGTCCGACAGATGGACTATGCAGCGCAGCCAGACAAAGACGATCCCTGCTGCTCTTCCTGCAATATACAATAACCCTCCGGCACGAGGGCTcgcgcaaacacacacgcacaccacacactgcacatacatgcacaaacaTGCAGGCACAGtcatatacatttacaaaatacacataaatttCAATAGATGTTCTTTCTGGTGCATCGGTTTTCTCATAGTGTAATTCATTCTGGCGTATATATGTCTGAATGAGGATTTTTTTCGTCACTTTACCTGACTGACTCACAGAGAAGTGCACTGGCCTTATGAGTGAGTGCCCTGTTTCCTGATGGAGTTTAGTGTACACTACTCCTGAGGTTTGTTAACACTATTTaaccattgttttgttttgtttttgtttgttttcctgttgaCTTGACCCATTTTTATTGAAGATGTGTTTCTAATCATGTAACTTAGACAGAGCTCTTATAGCCGAGGGATCGACCTCCACAACCTCAACcattaaactttaataaaagaatGATTAGAGGTAGAAAAAAGATGAAACACACGCTCCAACACTaccaaaaaaatacatttcaaacacCTCCTTTCCCCCTTTGCTCTCAGTTGTTCTGAAGGATAGAATTGTAGACGATTCtgtatgggttttttttttcttgaacatCAGTGTGATGTTGTGTATCAGTTATGTGTTCTCTTTCTGAGAGATGATGACAGGACTCTGACCACAGAAAACCCAGGCCTCTTTCAGTTTCTGTGGAGTTTTCATCATCCAGCATTTGAATTTTGCTCCTGAGTTAGGTTAAACATTCTTCACATGGTGCCATCAAACTCCACTCTAGTGCTAGCGTTTCACAAAAAGGTGCACAGGGAGAAAACCAATTTCAAACAGCAATGAAAAtcattgatgatgatgatggtgatgatgatgatgatgatgccagTAGTCTAAATACAAATATGGACATTGCCACTTCCACTCCGGCTCCTTCTTCCTGTGGGCATGTGGACTGTGTGCATGGCCAGAAAACTGAAGAGCCTGAAGCAGATTTAAAGAGTTTGAGCCAAAACGATGATCACTCCGGTCAGACCAGAGCAGCGAGGTGCTGTGTATTCAttgttgattttatatttttttatgtgaacattTACTCTCTCCTTCCTGAATGAATGGTGACACTCTTTCATTTGGCACCTCAATAAAGTGTGTTCAACACATCGTCCTTGATAACGCTCCTTTAATAAAAGTTATGACTATAGGGAAAGTAATTTTAGGAAAAACACATTTGTCATGTACAAGCTGCcctgcttttatttaaatgatagTAAGATGTGTGGTGTGTTAATCTGTACATGTGGGAGTGTGAAAATACATTATTATCATGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07837 RAP2A; Ras-related protein Rap-2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100817 lncRNA downstream 188324 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 189793 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 191718 18133402 ~ 18133689 (-) True G84880
TU100815 lncRNA downstream 193409 18131410 ~ 18131998 (-) True G84881
TU100258 lncRNA downstream 491818 17833375 ~ 17833589 (-) True G84411
TU100942 lncRNA upstream 203143 18540353 ~ 18555865 (-) True G84975
TU101041 lncRNA upstream 330781 18667991 ~ 18668211 (-) True G85069
TU101156 lncRNA upstream 576177 18913387 ~ 18915283 (-) False LOC113526313
TU101194 lncRNA upstream 701017 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 714188 19051398 ~ 19053050 (-) True G85211
XM_034304397.1 mRNA downstream 11676 18261235 ~ 18313731 (-) True LOC113526154
XM_034304855.1 mRNA downstream 67182 18179194 ~ 18258225 (-) False zmp:0000001200
XM_034304856.1 mRNA downstream 67183 18179194 ~ 18258224 (-) False zmp:0000001200
XM_026912585.2 mRNA downstream 67184 18174996 ~ 18258223 (-) True zmp:0000001200
XM_034304886.1 mRNA upstream 4206 18341416 ~ 18370653 (-) False mbnl2
XM_026912976.2 mRNA upstream 4206 18341416 ~ 18370458 (-) False mbnl2
XM_026912974.2 mRNA upstream 4206 18341416 ~ 18370455 (-) True mbnl2
XM_026912978.2 mRNA upstream 7640 18344850 ~ 18370461 (-) False mbnl2
XM_026912977.2 mRNA upstream 7640 18344850 ~ 18370457 (-) False mbnl2
TU99754 other downstream 1285564 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 2104541 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3248212 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3488014 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3771948 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1143910 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1231541 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 1889518 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2798836 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2798836 21136046 ~ 21144621 (-) True phgdh

Expression Profile