RNA id: XM_034304791.1


Basic Information

Item Value
RNA id XM_034304791.1
length 2113
RNA type mRNA
GC content 0.41
exon number 13
gene id lnpa
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17667566 ~ 17679161 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACCAAAAATATCCTTTTTCCGTTATTTCGGTACTTCTCGCTGTGATACATAGCAGAGTTTGCTGTCTTGTTGCAGGACTGTAAAAGTTATCGCCGTTAGGCTACTTTGTGTCATGTTTACTAGTTAAGCTTCCTAGTTTAGCTCGTACAGTGCACAAGGTGGTGAAGTTTTTTCAGCTGTTTAACAGGAGTACACCAAGAGAGTAGAAGTGTGAATCTACTCCTCAAGATGGGAGCTTTGGTTTCTCGTTGGAGGACCAAGCCAACAACTGTGGAGGTATTGGAGGGGCTTGATAAGGATATCCAAACCCTTGAGGAACACAGAGAAAAGAATCAGAAACAGCTGAAGTTATGGGTGTACAGATTACTTCTATATTCAACCCTTCTGTACCTGTTAGCCTGCATGGTTGTTTATATGTGGTACATCCCTGAACAGCTAATGGGGAAACTAATATTGGCTTCACCCTTTTTAATATTTCCACTACTtGTATGGCTTCTGAGAAAACTGTTAATTATGTTATATTcaagaaggacagaaagaaatgttgaaAAATTAGAAGAATtgaaagctgaaaaaaagaaaataCTTGAACAGGTGATGGAGACGGAAACGTACAAAAATGCCAAATTGATACTGGAGCGGTTTGATCCAGATTCTAAGAAAAAGATTGAGCTGGATGCTACACCCATCGGACCTCCTGTAACTCCTCGGCAAGGTCAAGagctTCGTCAGAGGCATGTGACTCCTCGCCCTCCTGTTCCTGTGACTCCAAACCTAGCAGTAGCAGCACGTCCTCCTCCTGGCCCTTCTGCCCCTCCTGCCCTGATCTCAGCCCCAGGTGGGCCTCCAGAGAGGAACCTGTCTTCTTCTGCCCAGCACCATAACCTGCTGAGGAGAAATGCTACCCCCACAGGCTCCCCTGCCCCTGGTGTGGGAATGCATCCTCCTGGTCCACCCCTGGCACGGCCTGTCCTCCCTCGAGACAGAGGCGCTTTGGACAAGCTTATTGAGTACCTAGTAGGTGATGGCCCTCAGAATAGATATGCCCTAATATGCCAGCAGTGTCTATCTCATAACGGCATGGCATTAAAGGAGGAATTTGAATATGTTGAGTGTGTTATGGCTGCTGTTTCAGCATTCAGATGTGCTTACTGCTACTTCCTGAATCCTGCTCGGAAGACACGCCCCCAGGCTCCACATCTCTCTGAATTTAGTGAAGGCAAGACAAGCCTAGGACCATCTGCTGTTGCCTTGGAGACAGACCAAGGTGCACCCACATCTTCCCCAGCAGAGGATAAATCTGAGTCCTTTGGCCCTGTAGAGGAGGAGAAGTCAAGTGAGCATCAGGCAGAAAACCAAAAAGAGAAACCAGGACCTCTAGAACCAGCCACCACTCTCTCTGACCTTGCTGACAAATCAGACAATGAACAAGATGTATCTGCTATGGAGGTGGAATAAAGAATATCTACAAATTTAACCAGTCCCCTGGAAAGGTGTGCATTATGTAACGCATGTTTAACGTGTTTGGGAGTACTTAGACTAGTTTAAGTATacttttcttattaatttctttcttttttttaaaaactgtaataaatctGGAGGAGATGAGGTTAAAAGACAGAAATGCCAATAATTAAGTGCTAAAAACTTATCCTGTTTGtgttcaaatatatattttttttgttttatgttgaaGTACCCTTCAATCTGCATCATTCTGACCATTTACATGTCTTTAGTTTAGTTCTCCCTAATGAGAATAACTCCTCAGTGATAGTCCTTTATTTCAGAAGGGAAAATTCATGAGTACTGTTTATGACTGAATGTATTTAACTTGTTTTTCCAGCATGTACAATAATGCAAAATGTCTGCTCTTTTCTgagaaatatttgatatttatagATGTTTACACCTTTATTacagtgcctttttttttgaaggTATTAAGTAGGTTTATAGTTTTCTTTGTACCTGCAGTGAGATGGGTTTCATGTTTACACAGATTAGCTAGTCATTAAAAAATCCacagctatttatttaattatagaaTCTGAAGGTAGAGCagtattatatatgtatgtgccTTTCTATTTaagatttctgtaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100003 lncRNA downstream 236136 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA downstream 236245 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA downstream 236245 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA downstream 236245 17408749 ~ 17431322 (-) False LOC117597450
TU100005 lncRNA downstream 275620 17391684 ~ 17391947 (-) True G84227
TU100221 lncRNA upstream 16255 17695290 ~ 17697086 (-) False evx2
TU100224 lncRNA upstream 47618 17726653 ~ 17727997 (-) True G84394
XR_004578231.1 lncRNA upstream 61602 17740637 ~ 17744020 (-) False LOC117597384
TU100243 lncRNA upstream 61604 17740639 ~ 17744025 (-) True LOC117597384
TU100258 lncRNA upstream 154340 17833375 ~ 17833589 (-) True G84411
XM_026911770.2 mRNA downstream 107494 17556819 ~ 17560073 (-) False atp5mc3a
XM_026911778.2 mRNA downstream 107552 17556819 ~ 17560015 (-) True atp5mc3a
XM_026911759.2 mRNA downstream 111402 17529937 ~ 17556165 (-) True atf2
XM_026912706.2 mRNA downstream 144516 17486048 ~ 17523051 (-) True chn1
XM_034304693.1 mRNA downstream 144522 17486048 ~ 17523045 (-) False chn1
XM_026912926.2 mRNA upstream 17229 17696264 ~ 17699980 (-) True evx2
XM_026912536.2 mRNA upstream 202736 17881771 ~ 17892018 (-) True nfe2l2a
XM_034304176.1 mRNA upstream 203166 17882201 ~ 17896933 (-) False nfe2l2a
XM_034304177.1 mRNA upstream 203166 17882201 ~ 17887072 (-) False nfe2l2a
XM_026911925.2 mRNA upstream 258018 17937053 ~ 17991511 (-) False pde11a
TU99754 other downstream 627724 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1446701 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2590372 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2830174 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3114108 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1802085 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1889716 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2547693 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3457011 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3457011 21136046 ~ 21144621 (-) True phgdh

Expression Profile