RNA id: XM_026912996.2


Basic Information

Item Value
RNA id XM_026912996.2
length 5872
RNA type mRNA
GC content 0.47
exon number 20
gene id ppp1r9ala
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17216721 ~ 17249832 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGTGCACGCGCCCACGCGCCCGCCTCTGAGTGTGTTGCACGCGCGCTACTCACGAGCACGAGCGGCGTCGGAGCAGCGACAGGTCTGGAGTTTTCAAGGAGGGAAAAAGgcaggagagaggaggaagggaGAACGATGGCGGGGAAGAAATGACAAGTTTGAAAGTGTGGGTTACACCGGGAACACCGGGAAAAAGTCGACCGGCATTCCGGAACAAAGCACCTATGCTGAAgGGAATTGGCCTCTTTTTGCAGATGTCCGCCGCCTGCTTGGTCTGAAACAATGCCCCGGAGAAACTCAGGACTTGATGGCTTCGTGCGAGTAGGATAAAAACGCATCAGCTACAGCTACTAATCCCAATCTGGATCTGCGTTTGGACTCCTTCAGATCACTAGGGAACGTGTgtgaaaaatgatcaaaacCGAGAGCAAAGGCGAGAGGACTCTGAGGAGcgcgtctcctcacagaaacgCGTACAAGACGGACTTCCACGCCATCAAGTGCTCCTTTGACGGAGCCAAGTCCGACATCGCGTCCAAGTCGTGTGCTAATGGCTCCTCCGGTGAGCCGCGCGAGGACGTAGCCAGGGGACGAAACTTTGGCAACCGCGTCAACAAGATCAAGAACATTTTCCTACAGATGGAcagccagcagcagcaggagaacCAGGAGGGAAAAGCCACCACCAAGGCAGACGCGCCTCAGATCTCCTCGCCACCGAAATTCCCAGGTAGTGGCACGCACAAAACCAGCCCCACCACCTTGGATCCTCAGAACGACAGGATCCCGAAAGGGGAGGACCCTGAGATTGACAAAGCGGCCTTGGCGGAGAAGTTTTCTGTGACTAGAAAACTATTTGAGAGGGGTATAAAGGAACAGACTACAGTAGAGAGGCAGGCCCCAGGCAGGGCCTCTGGACGCCTCTCCCAGGGTAATGTGTGTGAAGAAAGGAGAGCAAGCAGGAAACCTGGAGGGTCATCTGAAAATAGCAACAGCAGCATTATTAAAACAGATCGCGGCCCTGCTTCGCCGGAAAGTAAGGATGCTGATGACTCGAAGCAGGTCAATCGATTGTTAAATGCAGGACCTATATCGAGAAGACTGGAGAATTTCATTGCAGATGGCGATATTGAAGAATCAGCAAGAACATCAGCTAAAACACCAGAGAAGGTTTGTAGTCCTGCAGAAAGATCAGGACCCATGTCTCCTGTACGAGACACCGCTCACAAACCAACTTCACCTTTTAATGACCACTTCCAGAAACCGACCTCCCCCAGTAATCATTCCAAACCAGTTCACTCTCCGACTTCACCAACCAGTGACTTGGAATCAAGATCTAGCTCTCAAACGTCTTCTAAGCCCACCTCCCCTACCACAAAAGGCGGTGATGAGACCTGCGTCCCCACTTCAAGACATCCATCCTCATCAGCCGATGGTTTTAATAAATCTCTCACAGGCACTGAGGGAACCAAACCCACTGTTACTCCCAGGGATCAAAAGCCTTCAGCTTTTATCAGCAGCTTTTACAACAGAGTCAAGGGTCCAGAGGTGGCTAAGCGCGAGTCCGTTACATCACGGAGTTCATCTGGAGACACGTTACCTCCTCAGTCCCCGCCGAGCTTGGATCCTACTGGGGTAGGAATGGTCCGTGCAGAGCTAGTCAGGGTCCAGAATGAATCGTCAGAAAGCGAGGAGAATGAGGAGGACTGTGTATTTGAAGAGCTTAAGCTCAAAAGGGAGCTCAGTCCAGACGCGCAGAGAGGAGGTCTGACCAGAGTAGCTTCAATTCCATCATCTCAAGATGACCTTCAGAAGGTCACAGAGGTCAAGCAGCAGGAAAAGGCAGTTTCTGACTCACAGGAGGGACAACTGGAGGAGCAGAGAGCGGAGCTGGCAAAGCAGGAGAGTGACAAACAGtgtgatgaagaagaggaggaagaggaagagagtgagCAAGATGATGAGGATGAATGTGGAAAGACATCGCCAGTGTTTTATAGCTTTGAAAATGCAGCATTTGTGGATGATAAAGAGACGGGGCCTGCTcagaaggaagaagaggaggaggaagaggaagatgatAATCAGGACTATGAGGAGTATGATGAAATTACTGGTCTCTCAGAGGATGAAGAATGTTCACCCAGGAGGAAGATACGCTTCTCTAGCGCACCAATACGGGTTTTTACCACATACTCAAATGAAGACTATGACCGACGCAATGACGACGTGGATCCTGTGGCAGCCTCTGCTGAGTATGAGCTGGAGAAGCGTGTGGAGAAGATGGATGTCTTTCCAGTGGAGATGGAGAAAGGTGATAATGGGCTAGGCATCAGCATCATAGGCATGGGGGTGGGAGCTGATCAGGGTCTGGAAAAACTCGGCATCTTTGTGAAGACCATCACGGAAGGAGGAGCGGCTGAGAGAGATGGCAGGATCCAGGTAAACGATCAGATTGTGGAAGTCGACGGCATCAGTCTGGTGGGAGTGACACAGCTCTTTGCTGCTACAGTCCTGAAGAACACAAAGGGAACAGTTCGCTTCCTGATTGGTCGGGAGAAACCGGGGACCCAAAGTGAGGTGGCCCGGCTGATCAGTGAGACGCTGGAGCAGGAGAGACACCAGCAGCAACAGAGACTGGAGGATCCATATGAGCAGTCCACAGAGGAGGACGAACACTACGAGGAGGACGAAGGAGAGGAAGACGGGATTGTAAGCTCGAGTTTTGGCAGGAGGTCTGTGGAGCTGTATGATTTACCAGAGAATGAAAGGATGTTCTTGCCATCAAATATGGATACCGCACAGCTCAGCTTCAAATTTAAAGAGCTCCAGATAAAACACAGTATAGCCGAGGCCGAAGTCGATCAGCTCAAAGAAAAGCTGAAGGAGTCTGAGAAGGAGCGAACAGCATGGGAGGAACGGCAGGAACAGCTGGAGAAATGTATTGAGGAGAACTCGGAAAGAATCAACTACATGGAGAAGAACTGGCTGGATGCTCAGGCTCTCTGCAAAGCTCTTAATGAGCAACTCACGGACTCTCAGAACCAGTTTGAAGCTTTGGACAAGAAATACAGCAAAGCAAAGAAACTGCTCAAGGAGTACCAGCAAAAAGAATCAGACTTtgtgaagaaggaggaggaactGAAGAAGATTCTGGAGGAGAAGGAAAGCTTTTACAAAGCCCAGTTAGAGAACTTACAGAAGAGggttgAGGCTCTGGAGTCCTGTACCAAGCCTCAGGACTCTACAGCAGAAAACCGCACTGAAGGGTCTACGGGTTTAGACAGTAAACCTGCAGACTCACTTCTACTAGATACCGACTGGAGTGAAGTTGTGCCCGAGACTAAGCTTTTGGACACTAGTGCCCATCGGGCCAAAGGCCTGCTAGCCCAAAAGTCCAAACGGCAGCCCCCATCTCGCAGTAAGCTCAGAGAGACTAGCAACTCGCCAGCATGCCTTCCTCAGGGTGAAAAGGAGGAGTCTCAGGGTCCTCCACATCGTAGGCGGTCACTACAGGATAGTATGTCCCTGCCAGTGCCCATCTCTCCGCCAGCTAATGGCCAGAAGGAGGAACCTGGCACTGCCCGGCCTCTGGGCACTTCCAGAAGCAGCATGGAGCTCTCCGTCCCTCAGTCTTCCCCTGGAACCAGTACAGAGAACCCCTCCATTTCCACAACAAAAGATTCTTCCCCCTCTGGCTTTCTCCGAAATGTCAAGAAGAGAGAGTCCAAAGGAAAAGGCAAAGAGGTTAAAGaAGACCCCAGTGATGGAGCAGGAAAATCTAAAAGGCGATTCCCTGATTTTGGTGGTCTCAGGAAATCTGGTGGGAAAGGcaagaaacatgacaaagaagcAATGAGAGCATCATTGGACAGCAGAGGCTCAGCGGAGCTGCTGGAAGAGTCAGGGCCAAACATCTCGCCCTCAGAGTCCTTGGCGTCCATCCCAACGTGCATGCCTTTCTCTTGGTTCGGTGATaaggacaaagagagagaccgAGAGCCTTCATCTTCTACCAGCAGTCTTCCTCAAACTGCAGCAGAACCCAGTGAACAGCAGGACGGCAAGAACAAGACAAATCTTTCCTGGTCCTCTCTGTTCAGTCGATCTTTAGATTTGAGCATGTCAGTGCTAGATGATTCAAAACCGGGCAGTCCGAGTTCAGAGTTAGCAGGGCTCGTGGCAGAGCCCAACCTGTCAGGCCGAGCTCACACTTTAACCTTCTCTTCCAGTGAGATGCTGGATAATGAGCCTGGCTCAGCGGGGAAAGACTACCAGTGGCAGAATCGTCCAGTCTCTGAGTGGACAACTCAGCAAGTGTGCCATTGGCTGATGGGCATGAACATGGACCAGTACACTCCTGAGTTTACTATGCAGGGTGTTGATGGACTGCAGCTGATGAATCTGGACAGTGACAGACTAAAAGTGCTTGGAGTCTCTAGCCAAACTGACCGTGCCATGATTAAGAAAAAGCTGAAGGACATGAAAAAAGCCCAGGAGAAACTGGAAAAACAGCGTGAGAAACGTGACAAAGAAGCTAGACGAAGCGGGAGACTGCCAGGCAACAATGACTCTATCTGCTGAAGCCACCTTAATCTCTTTCTAggtttctcgctctctcttcctctttgttTCTACTTCTCTGAAGCATTGACACACTCTGGTTTGTGTCAAGCAGGCAGCTGACGGCCCTTTGCTGTTTAATTCTATAGTTATGTGCAGGTGACATGTTAATGCAGTCAATATGTAAAATCAATCCATCATTAATTAGTAGGAACTAATGTGCAGAGCAGGTATATATTAGGTCTGTACCTCTTGCCTGACCCTAATGCAAAAGAAATACCGTTCATAACAGAAAAATAGCAGATTTAATAATTACTACACTGTAAAATTTTTCACCTGATGCCTTAAACCTAAAGGGCAGTGCAGAGTATGCACCATGTACATTTCCTAAACAGGACTCTTAAAACATGCTGACAAAACTGAGACCTCTCTAGGGCCATAGAGCATTGATTAGAGAAATGTATTACAGCCAGTGTGGACCATCTAGATGATAGTGAATTCTCTGTGCTACCTTTAGCAgactttttattgtattttatgtgCACAACAAAAGAATATTTCTTGACTCTTAAGAGAAcaagatacacatacacatgcctTTAATTTTGGAaagaataatgtttttaaaacatcttTGTATCTATTTTTAATAGTACAACTGTCTCCTGTCCCCCTGTATAAACCTTCTTTGCTGGAACTTTGTACAGTCCTTGAGTGAAAGCACTATATTTGTCTTTTAAGAGGCAAATGGTGACAtggtttttaaatgtacaaatgagATATTTTATACACTTATTAACTTCAGACGAAAAACATTATTGATTAAACTTTTGGACACATTTTCTACTGAGTAGAATAGCTCATAGTGTAAGACCTTTTTGCAatttataaacagtaaaaaagtgAAATTCTTTAGATGTTGCTGCAGTTTGACTGCATTGGTTATGGTAATACTCTTTCTATCTATTCCAGGTCTTAAAGGTTATCACTGATCATCAAAGCAGGGTATGGAGTTGAGTTAAAAGACTTAAAAATTTcaggtgatttaaaaaaaaaaatggagaatgCTAAAAGTTTTGATGTAGTGTGATCATTCATAACTTCTTGTTGTATTTCATGTTTATCCCACCTACTACAACCTCCTGAATATTAGTTGTACAATTGGCTAAGCCCCAATAGAGTTCCtatataaatggattttaattGTTTCAATACAGGACTTTGTCAGACCATAAGGAAAACCTAATATCCAGTTATTTCTCTGGTACGAGAGTACAAGCTGCAccaataaatttattttcactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99803 lncRNA downstream 88041 17127310 ~ 17128680 (-) True G84061
TU99680 lncRNA downstream 250548 16965511 ~ 16966173 (-) True G83953
TU99271 lncRNA downstream 806828 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 840435 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 988284 16224341 ~ 16228437 (-) True LOC117597324
TU99946 lncRNA upstream 57737 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 74213 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 82660 17332492 ~ 17346350 (-) True G84189
TU99971 lncRNA upstream 122147 17371979 ~ 17373212 (-) False sp3a
TU99968 lncRNA upstream 122245 17372077 ~ 17373212 (-) False sp3a
XM_026913164.2 mRNA downstream 6823 17176681 ~ 17209898 (-) False dync1i2a
XM_026913162.2 mRNA downstream 6823 17176681 ~ 17209898 (-) True dync1i2a
XM_026913163.2 mRNA downstream 6928 17176681 ~ 17209793 (-) False dync1i2a
XM_026913130.2 mRNA downstream 68046 17129990 ~ 17148675 (-) True hat1
XM_026913117.2 mRNA downstream 118739 17095074 ~ 17097982 (-) True dlx1a
XM_026912831.2 mRNA upstream 122226 17372058 ~ 17381172 (-) False sp3a
XM_034304695.1 mRNA upstream 122226 17372058 ~ 17381171 (-) False sp3a
XM_026912829.2 mRNA upstream 122226 17372058 ~ 17381171 (-) True sp3a
XM_026912830.2 mRNA upstream 122226 17372058 ~ 17381170 (-) False sp3a
XM_026913145.2 mRNA upstream 187326 17437158 ~ 17443522 (-) True cir1
TU99754 other downstream 176878 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 995855 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2139526 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2379328 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2663262 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 2231288 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2318919 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2976896 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3886214 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3886214 21136046 ~ 21144621 (-) True phgdh

Expression Profile