RNA id: XM_026913014.2


Basic Information

Item Value
RNA id XM_026913014.2
length 2568
RNA type mRNA
GC content 0.44
exon number 4
gene id rcan1a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13833501 ~ 13842569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAATAAAGGGACAAATCCACTGGCTCTGGAGTCAGAGAGAAGGGGTGGGGGAGCAAATGGATAGAGCAAAAgcagagagcatgagagagagagagatgaagggaATTAACACCCATGGAAAGTATGCTGCAGGGAGCTGTTGATAACACAGCTGCCTCATTGCACAGCTCAGCTGATTTAGATTTTCCATCCCGCTCATGAAGAGGGAGGGTGTtcagggagtgagagagaatcGCTATTGTGTGTGATAAATTACAGTGGTCCAGCTCTACATGCCCAGCTGGAATGTGTCAGAACGGAGCAGACTGAGGTTGGTAAAACTGAGTTTAGGTTATAGTCAGGAGTGACACAAATTTTCCAGCCCTTGTGCTCTCGGTTTGAGTGGAGATGAGTCAGCACAGACAGCAAGGAAGGAGGAATGTAGTttcactcactccctccctTCCTGAAGGGGCTGGGCCTGTCACTGTGCCGCTGAGGCTCTTACATAAAGAGCAGAGAACCCGCAAGTGTGCAGTCTGACTGAGCCACAAAGACGTTTCATCAGTGGTGCAAAAACACGTGCTCCCTTCCAGAAGATTCTTTTTGGACAACACAGCTTTCCTATGCTCTGCTAACAAGTCGGCGTTCCTCCATcatatcatcttttttttctctctctctcttcctgctgGTTTTGACGTGTTGCTCATTTTGGCTGTGACCTATTTCCGGCATCAAACCCACAGCCTTGACTtcaacagacagagaaaagaggaagatagaagagaaagaaaaggccGCCTAACAGGAAACTTGAAAAAGACTAGGATTTATTTCTGATCCCGATCTCATTCTGCTCTCACGCTGGGGAAGGCAAAACGGACCCCTTTCAGATTTCTCACACCTCAAGTCCGCTGCAGGATTCAGCGAGCATCCATCATGCACCTGAAAACCATGAAGTGCAACCGCTTCTGCCTTATCGCATCCCTAGAGGATCTGGATATGTTTAACAGACCTGAGGCCAGGGCTAGGTTCGAAGAGCTCTTCCGTGCCTTTGATGGTGAAGTTACCTTTCAGTTTTTCAAGAGCTTCAGGCGAGTGAGAATTAACTTCAGCAATGCTCTGGCAGCTGCAGAGGCGAGAGCAAGACTCCACAAGAGCGACTTCAACGGCTCAGAGCTCCGACTTTATTTTGCCCAGTCTGTACATATAGGAAGTGCACGACTGGAGCCTCCTAAACCAGAGAAGCAGTTCCTCctctctccacctccatctcctcctGTGGGATGGGAACAGGCTGAGGATGCCACACCTGTCATCAACTACGACCTTCTCTGTGCCATTGCCAGACTTGGCCCAGGGGAGAAATACGAGCTACACTCTGGAACCCCCACTACCCCCAGCGTggtagtgcatgtgtgtgagagtgatcAGGACAGCTCTGGTGCCGAGGACGATACGGACAGCTTCAGACGGCCGCGTCCCAAAATCATCCAGACCCGGCGTCCAGATTACAGCTCCTCCATCACCCAGTGAGCATGAGGAGTATGTCCTTGTGCTGTtaagtttgtttttctgtctcggGACTGTCGGGCGTGCAGGTAGTCTGTCCCCATAGAGGATGTGTTCAGTCAGAGCTCAGCCCTGCAGAGAAAGACACATTACATCTGCACTGTCTTTCAGGGGAAAGTGAGTTTATTGCATGCATTTGTTGATAAAGTGGCTCATTTCAACACATCTAAAGGTTAAGGGGGTTTCATGGATGGTTTCCATTGATGTCTATGGCTACAGAGAACAAAAGCCTCCTGTTgtggctttatttatttcctttaatttgaGAAGCATGTTTTAGGGCAGTCCAAGGTGCATTTTTATGATGGAATTTGTTGTCatggttttggtttttatttgattttgatCAATAGACTCCTCTTTGATGTTGGCATCAGTGGAAATGTGAGGCATTATTACAAAGCCTTTGTATGAATGTTCGTTAATCTTAGACTCTGAACATTTGTGGTaatgggtattttttttttttactttatatgtTGGTTGTAAGGAATGACAAGGAAGTGaaaatacagatttaatttAGTAAGCTTCCTTTCTCAAAAATCATGTTGTATGTTGAATTAACCACTTGTTTACCACTAATTTGACAAATGGTTTTGGTCAGTAGGAAATGTTTATTGGACATCCTGACACATTATCTTGATGATAATATTTGTATGGAAATACCATGTCATGACTGAAATTTGTATTAAGTTCCTTCGACCATAACACTGTAATACAATCAGTTTTAATGAGGGACGACCTTCATGCCCTTTACTAGGATTTGCACAGGTTACATTTGTTACATGGTAAAAGTCATTGTACTAATGTCTGCTTTATTCGGCCTAATTGTGGTGTTtgactgtgtatgtatgtttaccTCATTGTAATGTCTTAATTGTCTGACTGCTCAGAAATTTGAAAGAATCTGCTTGGTTTCCACAAAGTTGTTGACTCAGTAATGGCTTGgatgtatgtattgtatttgtaCCTTAAcaaccaaaataataaatcaggaTTTTGACATGTA

Function

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97359 lncRNA downstream 477807 13354741 ~ 13355694 (-) True G82055
TU97338 lncRNA downstream 500998 13332290 ~ 13332503 (-) True G82035
TU97298 lncRNA downstream 525775 13307527 ~ 13307726 (-) True G82012
TU97286 lncRNA downstream 531244 13302054 ~ 13302257 (-) True G82000
TU97281 lncRNA downstream 533098 13299458 ~ 13300403 (-) True G81995
XR_004578196.1 lncRNA upstream 49199 13886647 ~ 13889526 (-) False LOC113523953
XR_004578194.1 lncRNA upstream 49199 13886647 ~ 13889526 (-) False LOC113523953
XR_004578191.1 lncRNA upstream 49199 13886647 ~ 13889526 (-) False LOC113523953
XR_004578193.1 lncRNA upstream 49199 13886647 ~ 13889526 (-) False LOC113523953
XR_004578192.1 lncRNA upstream 49199 13886647 ~ 13889526 (-) False LOC113523953
XM_034304898.1 mRNA downstream 801 13831796 ~ 13832700 (-) True LOC117597444
XM_026913033.2 mRNA downstream 5408 13821928 ~ 13828093 (-) True mab21l3
XM_034304483.1 mRNA downstream 24056 13798037 ~ 13809445 (-) True atp1a1b
XM_026912643.2 mRNA downstream 118268 13451192 ~ 13715233 (-) True lrp1bb
XM_026946882.2 mRNA downstream 502794 13322630 ~ 13330707 (-) True si:dkey-3d4.3
XM_026912716.2 mRNA upstream 8174 13845622 ~ 13855186 (-) True si:dkey-67c22.2
XM_026912966.2 mRNA upstream 376095 14213543 ~ 14223378 (-) True si:dkey-192g7.3
XM_026946328.2 mRNA upstream 410021 14247469 ~ 14253293 (-) False gabpa
XM_026946337.2 mRNA upstream 410021 14247469 ~ 14253223 (-) False gabpa
XM_034304225.1 mRNA upstream 410021 14247469 ~ 14252950 (-) False gabpa
TU96948 other downstream 1105476 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1116832 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2797940 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2862344 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3224459 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 715003 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 990338 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1225977 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 2382516 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3190859 17028307 ~ 17039843 (-) False mettl8

Expression Profile