RNA id: XM_034304773.1


Basic Information

Item Value
RNA id XM_034304773.1
length 1431
RNA type mRNA
GC content 0.44
exon number 11
gene id slc38a11
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18373177 ~ 18379363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGAAACTTTTTCACGTGTTGAAATGGAGAAGAAACCGAATGACAGGAGTCGACTCATTCACAAGCAGGATGAGGAGAGGATGTTACTTTCACCGCATATGGAGCATGCTGAGGGTGGAACAAGCTCCAAGACATCTGCCTCGTTCAATTTCATTAACTCCATCATTGGATCTGGACTTATTGCCCTGCCGTTCTCAATGGCTCAGGCCGGCCTGCCTCTGGGACTGCTGCTGCTTTTTCTAGTTGCGGTCATTACAGACTACTCAATCATCTTGTTAATAAAAGCGGGAAACTTGTCAGGGACACACAGTTACCAGTCTCTTGTACGCAGCACTTTCGGCTTTGTTGGATATCTAATTTTGTCAGTCCTGCAGTTCCTCTATCCGTTCATCGCAATGATAAGTTATAACATCATCATTGGAGATACTATGACCAAAGTGTTTCAGAGAATACCAGGAGTTGGTCCTGATCATATTCTGGCAGAGAGGCACTTTGTCATTTTGGCTTCTACCATCCTCTTCACAATTCCTCTCTCACTGTACAGAGATATGGCTAAACTGGGGAAGGTCTCATTAGTGTCCATGCTGTTAACTCTGGCCATCATTGTCATAGTAGCTGTGAGGGCTGTAACACTGGGACCACAAATcccCCCCTCTGAGGATGCATGGGTGTTCGCACAATGGAACGCAGTTCAAGCAGTTGGTGTCATGTCTTTTGccTTTATCTGTCACCACAACACCTTCATGATCTATGGGTCACTCAAGGAGCCCACTCTAAGTAATTGGTCCCGGATCACACATGTGTCTGTGGGCTCAGCTGCTCTAGTCAGTGCACTGTTTGCTGCTACTGGCTATGCTACTTTCACTGGATACACACAAGGTGATATTTTTGAGAACTACTGCAAATATGATAATTTGGCCACATCTGGTCGATTCTGCTATGGACTCAGTATAATTACCACCTTCCCTTTGGAGTGCTTTGTGACAAGAGAGgGTGTTCTAAGTGCCACGCCTCTGATCTTCATCATTCCCTCTGCCTGTTTCCTGAAACTCTCCAGTGGGCACTGGTTTCAGATGAAGAACCTTATGCCAACACTTATTCTCATGGCTGGACTTTTTGTTATGATTGTCGGTTTGATTATGACAGGACTGTCTCCTCAGGACTGTTCACATGGAGTGGAGATGTTTTACTGCACAGACTTGAACTCCTCTGCTTCACTAACTATGACTCCAGCTAGTAGTGTGCTTTCGATTATAAATTCTACTCAGAACATTAGTATTTTCTAATTTCAAATGGGACTTTGAAGTGCCATATTGAATATTCTGTTTCGTTGTATGATTTTCATGCCATGGTAGACCTACTTTGTGAATATGTTGCAAGAACTCACCAGTGACAAGTCTTCTACTATCTGTTTGTTAATGGACCAGATT

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100817 lncRNA downstream 236094 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 237563 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 239488 18133402 ~ 18133689 (-) True G84880
TU100815 lncRNA downstream 241179 18131410 ~ 18131998 (-) True G84881
TU100258 lncRNA downstream 539588 17833375 ~ 17833589 (-) True G84411
TU100942 lncRNA upstream 160990 18540353 ~ 18555865 (-) True G84975
TU101041 lncRNA upstream 288628 18667991 ~ 18668211 (-) True G85069
TU101156 lncRNA upstream 534024 18913387 ~ 18915283 (-) False LOC113526313
TU101194 lncRNA upstream 658864 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 672035 19051398 ~ 19053050 (-) True G85211
XM_034304886.1 mRNA downstream 2524 18341416 ~ 18370653 (-) False mbnl2
XM_026912978.2 mRNA downstream 2716 18344850 ~ 18370461 (-) False mbnl2
XM_026912976.2 mRNA downstream 2719 18341416 ~ 18370458 (-) False mbnl2
XM_026912977.2 mRNA downstream 2720 18344850 ~ 18370457 (-) False mbnl2
XM_026912974.2 mRNA downstream 2722 18341416 ~ 18370455 (-) True mbnl2
XM_026947055.2 mRNA upstream 89589 18468952 ~ 18497409 (-) True csrnp3
XM_026947069.2 mRNA upstream 89589 18468952 ~ 18481293 (-) False csrnp3
XM_026947062.2 mRNA upstream 89589 18468952 ~ 18481047 (-) False csrnp3
XM_034304810.1 mRNA upstream 290688 18670051 ~ 18703548 (-) True stk39
XM_026913146.2 mRNA upstream 290688 18670051 ~ 18703545 (-) False stk39
TU99754 other downstream 1333334 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 2152311 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3295982 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3535784 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3819718 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1101757 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1189388 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 1847365 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2756683 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2756683 21136046 ~ 21144621 (-) True phgdh

Expression Profile