RNA id: XM_026913033.2


Basic Information

Item Value
RNA id XM_026913033.2
length 2788
RNA type mRNA
GC content 0.42
exon number 7
gene id mab21l3
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13821928 ~ 13828093 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCTGGGATTTGTAGTTAATAAGCTTGTAGTCAAAATTATGAATGCAGTGTAGGGAACTAACCTCAAGATGGCGCCAAACTCCACATACCTCTCTATGAACCTGCAGTAAAATGCTGTGCTTCATTCCCCAAAGTCcgtaaaaaaaaccctcagctTAAATGATCCTCTGCGGATAGTAATTTAGGAGTTAATGTGCAGTGAATTATATGATGATATTTAAAGCATACACTAACAATGACCAATAACACTGGATTTTGATTAGCCATAAAACTGATGAAGCCTGCAGTAGccttttcattttatatgaaaTAGCTGAGCGTAGTTAAGTTGTAGGCTGTTTAGTCATATACATAATGGCTCTAATCTTGTTATTCATGATAACATATTGAGGTAGTTGAAGATTATTGAAACATCAATGTACAGACTGCAGAAATTTAAAATGTGACAAGGGTTCCAATAATAAGTGTTAATATTGGGCCCCCTGACGGGTAAATGCTTTGGGCTTCCTGACacaggaatatatatatattattctcCTGGTCAATTCCTAGAATTTTTCAGGGTTCATTCGGCTTTCCTGTCTAATCAGAGTCCTTGGAATCAACCCTCACCTTCCCCGCTTTATGGTACTGTCAAACAGTGGTATTCAGAATATAAAACAAGTTGGAGACTGTTTGTATTCAGTAAATGATACATATTGGAATTGGTATTAAGAGCACAGCTTCTTTACAAATGTTTAAGTGAAATCCTGTAGAAAGCCTTGCTACTAATACAAATCTGTATCAATCTGTAAAAGAAACACAATTAATGCTTTAAAATCAGGCACAGTGGTGCACCACACACAGTATTCAACACCAGAGTTAATGCACCCATTTTCGTGAAATGGTGTCAATACAGCTGGCGATCGAAACAAAATTGAGTAGAGCTGGCCCTTATTCAGGTCACCAGTGGCCCACTGGGTCCTAAGATAAATTTTTACTCTGAAAGAATCTCTCCAATTATACTGATGACTCTAGAATTCAGTCACAGAAAAGTCTtcttctgtctttatttattcaaaatgaaaagaagGGCTTATGTAGTACATTTGTAGCACAAATTTACATTGAGACATGCAGAttgtttgtctgtgttcacaTGCCTGGTCAGTCTAATGTAGGCTGTGTGAGTGGATCAGTGTTTATTTGGCTCCCCAGAGGACCATGGGACCATTTTACCATCTGAAAAAAGATCAATGCAATGAGATCAATCTGCTTGAGTGCTTTTCCATCAGTTCTGTCCATGTTACGTGGGTTAGGCTACAAAAGAAACGTCGCACAGATTGGGACACAGACCTCTCAAGCTCAGAACACAGAGAAAATATTAAAGCAGAGAAGAAGCCACAGCATAACAGGATTGTGAAATGACGAACTTTACTGAGGAAGATCTGGACCATTATTTACAGAATCAGGTGGATCTCAGACACCGGCAGGTCTCTAAATCTGTAGAGGAGGTGCAAAAAATAGTCAAAGACCTAACTGCTGAGATCAGCTCAAAGGATTCCCGCTTCCATTCCATCGCCAACACAGGAGTTCACAATAACAGCTTcaaaGATCAGCCTGCTCTAGCATCAAAATGGGCTGCATTACTTCAGGGAAAGGGTACTTTCAATCCTGCCATTCAGGTGCTGACTCCCACTCTGTTCCTGATTTCGGTGCCAGTACGGGGTCTTACAGGTTATAAGGAGAGACGGGCACGTCAGTGGCGGTATTACACAATGAGTGGTTCACAGCTCCTTTCACCAGTCCGAGAACCAGAGAAGCTGCACCAGTGGCTGGAACTGGAAAGCTTCACTAACCCTATTCAGGAGTGGCATGATGCTCGTGTGGCCATCGAAGGTGATCTTGTGCCCTCCAAAGTAGTCAGTGTCTTTAGGGAGCAGGTAGAGGCAGCCATTAAGTCCTGTGGGCTGACAGAGAAATTGAACATTCAGGAGTCACTGGGCTCAGTGGTACGTGTGGCAGTGGAGACATCGGAAGTACAGATAGAAGTGGAGCTGGTGCCTACAGTGGAGGTAATGAACTGCTGGCCTAAGAGAGCCCGCTGGCCTCGTCTACTACAGAGGTGGCCTTCTAAAGAGTGCACTCGCTGTGTTAAGTCTTTTGGTTTCAACCTCATGGCTACTTCTAATTACCACTGGCTGCTGTCATTCTCACGGGCAGAGCAGGTGCTGCTGGCTGGTATAGATGAGGATGGTGGCTGtaggaggaagtgttacaggGTGCTACGACAGCTGAAGGAGGATGTATGGTGTCCAGGGAGCAAACCTGTCATCACTACCTACCATTTACAAACTCTGCTGTTCTGGACATGTGAGAAGTATCCGAGCACCAGGGATTGGTGCAACTTACGAGAGTGTGTGCTGCGTTTGGTGCAGAAGCTGCATAAATGTGTGTCACAGCGCTATCTCAGGCACTACTTTGTGTGCACCTACAACCTGCTGAAGTACACCAACACAAACGAGCTAGATGACATGGCCAAAAAGATCTCGGAGTTCCTCAACAATCCAAGCGCCTATATTAATTAGGAGCTCTTTTTGCTTCTTATAGCATTGTATTATTtgagtaatgtgtaatgtggAATTAATAGCTTGGCACATAATAGAAGTTAGATGTGCAGTTATGACTAACATTAGGGTCAAATGTATAGATGATACTGTAGAAGAGACAGAGAAGTCAGTACAGTTACATTATGTATTAGATGTTTGAATACATAACTGTTGAATAAAGAAAGCTAATTTCATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97359 lncRNA downstream 466234 13354741 ~ 13355694 (-) True G82055
TU97338 lncRNA downstream 489425 13332290 ~ 13332503 (-) True G82035
TU97298 lncRNA downstream 514202 13307527 ~ 13307726 (-) True G82012
TU97286 lncRNA downstream 519671 13302054 ~ 13302257 (-) True G82000
TU97281 lncRNA downstream 521525 13299458 ~ 13300403 (-) True G81995
XR_004578196.1 lncRNA upstream 58554 13886647 ~ 13889526 (-) False LOC113523953
XR_004578194.1 lncRNA upstream 58554 13886647 ~ 13889526 (-) False LOC113523953
XR_004578191.1 lncRNA upstream 58554 13886647 ~ 13889526 (-) False LOC113523953
XR_004578193.1 lncRNA upstream 58554 13886647 ~ 13889526 (-) False LOC113523953
XR_004578192.1 lncRNA upstream 58554 13886647 ~ 13889526 (-) False LOC113523953
XM_034304483.1 mRNA downstream 12483 13798037 ~ 13809445 (-) True atp1a1b
XM_026912643.2 mRNA downstream 106695 13451192 ~ 13715233 (-) True lrp1bb
XM_026946891.2 mRNA downstream 491037 13322630 ~ 13330891 (-) False si:dkey-3d4.3
XM_034304308.1 mRNA downstream 491117 13322630 ~ 13330811 (-) False si:dkey-3d4.3
XM_026946882.2 mRNA downstream 491221 13322630 ~ 13330707 (-) True si:dkey-3d4.3
XM_034304898.1 mRNA upstream 3703 13831796 ~ 13832700 (-) True LOC117597444
XM_026913012.2 mRNA upstream 5408 13833501 ~ 13842569 (-) False rcan1a
XM_026913014.2 mRNA upstream 5408 13833501 ~ 13837448 (-) True rcan1a
XM_026912716.2 mRNA upstream 17529 13845622 ~ 13855186 (-) True si:dkey-67c22.2
XM_026912966.2 mRNA upstream 385450 14213543 ~ 14223378 (-) True si:dkey-192g7.3
TU96948 other downstream 1093903 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1105259 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2786367 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2850771 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3212886 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 724358 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 999693 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1235332 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 2391871 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3200214 17028307 ~ 17039843 (-) False mettl8

Expression Profile