RNA id: XM_026913038.2


Basic Information

Item Value
RNA id XM_026913038.2
length 1425
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113526203
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11698385 ~ 11701033 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGACCTTTGGAACATCACCTTTAAGGTTACTCAGGCAGCCTCCAGCTTTGGCGCCGACATGCTGACTGTTATCACGGGGAACAGAGACGGGTTTAATTTAAATCAGGAGTTAAATGAGGAATCCTTAATCCTAAACCAATTCAAATGCTTAAGCAGATTTGCTGTTTTTGTAGTTCTTTCACCCATTCTCTGCTCCCCCAGGTCTGCCTCGTTCTCATACGTAATAGTTGTAGTCGTACTGACTATTCTGTACTGTATACCAGAGCTACTGAAATTCCTCACTCAGAACGTGAACTCCAGGAAGAGTAAGAATGTGGACATCCTTTGGCAGGCAGCAGAGGTGTGCCGACGTCTCAATGGTGTGAGGGTAACCAGCTGTAAGAGTGCAAAGGACCGCACAGCTATGTCTGTAGCTCTGGAGCAGTGTCTGATCCTGCAGCAGGAGCACTGCATGGCCCCACAGGTCTTAAGTCAGGCCCTGGACTGCATGCACAGTGAGGGCTGCAGGAGAGAGAACACCATGAAGAATGTGGGCAGCAGGAAGTATGCTTTCAATTCACTTCAACTGAAGGCCTTCCCCAAACAGTATAGACCTCCAGAGGGTACTTATGGTAAAGTGGAGACTTGATTGGGACATTCATCTATGCCCCCTCCTACTGTTTTTCACAAGGCTGTTCTCCCCCATCATCCCCTTTACTTTGTTTCCACTGATCTGAAGCAAATGCTGCAGTGAATTCAGTCAAATAAACACTCACTGTAAATGGCCAAATAGGGTTGTAGTTTGACACAAGTTTGCATGAGTCACTGCTCTCTTCTGAACTTTGGGTACTATATCAAGGTGACCATGAGGAATACTTATTGGAAGAGTTTGATTGGGAGAGTAGGACTCCATTCATCCAGCAACAAAAACACTCAGCAACTACACTAAGCTAATCTGTTAAGGAATTACAAGTGCAAATTGCACAGTTCCTTTAGTTTGTGTTTGGTCTCTACCGAACCTCAGTTTCACATACCCAGATTCAATGGATACATAAATGAGTATTGTTCTTTTTCCATTCATTAAACGTGCACATTATACTGTAGCTGAACTGTAGCGTCAGTGATGTGACAGAGTAAGTCTTATCAAGTCATATGCTATCACAAGGCTATACATATAATGCTTTAAATCAACCCTTTAGCTTATTGACAGCAACAGTATGCATTTTACGGGTTGTAGATTTTCAGGGAAAGGGCCTTTCTCATGCTGTTGCTAAGCACAGGTAATGTTTGTATAGTTAATATAGTGGAATGTTGTGAATAGATATtaacataattttaataaagttgtgtaAGATAATTAAGACACTATTCAATCAGTTGTTGGTtgttaaatgtttgtatttgtgttatgTAAATCTCTTTTGGTTTGTGTCGATATCAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96157 lncRNA downstream 8417 11688535 ~ 11689968 (-) True G81014
TU96155 lncRNA downstream 11143 11686981 ~ 11687242 (-) True G81012
TU96130 lncRNA downstream 52399 11645391 ~ 11645986 (-) True G80995
TU96117 lncRNA downstream 96227 11601908 ~ 11602158 (-) True G80988
TU96090 lncRNA downstream 137799 11560380 ~ 11560586 (-) True G80972
XR_003402757.2 lncRNA upstream 59418 11760451 ~ 11763694 (-) True LOC113526311
TU96223 lncRNA upstream 59457 11760490 ~ 11763719 (-) False LOC113526311
TU96345 lncRNA upstream 143843 11844876 ~ 11857267 (-) True LOC117597344
XR_004578180.1 lncRNA upstream 146085 11847118 ~ 11857114 (-) False LOC117597344
TU96413 lncRNA upstream 340601 12041634 ~ 12045475 (-) True G81220
XM_026912502.2 mRNA downstream 649 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_026912501.2 mRNA downstream 649 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_034304672.1 mRNA downstream 2333 11692405 ~ 11696052 (-) True si:dkey-4e7.3
XM_026910266.2 mRNA downstream 53296 11641241 ~ 11645089 (-) True mrpl30
XM_026946489.2 mRNA downstream 216802 11461851 ~ 11481583 (-) True aff3
XM_026911292.2 mRNA upstream 9575 11710608 ~ 11737744 (-) True LOC113524909
XM_026912749.2 mRNA upstream 46993 11748026 ~ 11756862 (-) True mfsd9
XM_026912621.2 mRNA upstream 186835 11887868 ~ 11895080 (-) True fhl2a
XM_026912597.2 mRNA upstream 265461 11966494 ~ 11995666 (-) False uxs1
XM_034304859.1 mRNA upstream 265461 11966494 ~ 11995666 (-) False uxs1
TU95687 other downstream 662824 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 727228 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1089343 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2043930 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2129265 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 1012166 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 1012166 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 2851418 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 3126753 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 3362392 15063425 ~ 15077195 (-) False dcaf6

Expression Profile