RNA id: XM_026913117.2


Basic Information

Item Value
RNA id XM_026913117.2
length 2125
RNA type mRNA
GC content 0.47
exon number 3
gene id dlx1a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17095074 ~ 17097982 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCCGTTAACTAAATCTAGTTTCAggtagaaaagagaaaatgcgTTCATTAAGCATGTTTTATGCAACAGAATATTACCAATGCCTTATTATGTGTGAATTATTTGTTTCTCTGTTTGGGCGATTTGTTTTAATAAACGAgagattaaaaacaacaacaacaaaacagcattTCTCAGTGACCCTCCCCTGAATTCCCTTTTTAGCCTTGAACATTTGGCTCTCAGGTTTGTCTTATTTCTCGTGTTATCATATTCCTCGGACCCTACCCCGAGCTCTCCAATCCCCGCCACGCTTGGAGCGGGtggaccaatcagagagcagcttggataaatattcatgattccctGATTCAAACGTTTGAGCGAGTTTGTGTAGATCCGCCGCATCACACCTAGACTTTTCACAGAGACAAACTACATTTTCTTATGAATGGAAAGTGAAAAAATCAGTTCAGCTTAAATTGGGATCCATCCTTCACTGAGatagaagaaaacaaaaaaaggcaggAGAAGAGAGATTCGCACTGAAGACATGACAATGACCACAATACCAGAGAGTCTAAACAGCCCCGTCTCAGGAAAGAGCGTTTTCATGGAATTTGGGCCACCAAGTCAACAAATGTCGCCTTCATCTATGTCTCACGGACATTATTCAATGCACTGTTTACATTCAGCCGGTCATCCTCAGCACGACAGCTCGTACAGTCCCGCTCCGTCTTTCCCCAGATCGCTGGCTTATCCATATGTCAACTCAGTCGGTAGCCATTCGTCAAGTCCATATCTCAGTAGCGTTCAGACTTACCAAAACAGCACGGCGTTAACGCAGACGCGCTTAGAAGACGCAGCACCAGAAACGGAGAAGAGCACGGTGGTGGAGGGAGGAGAGGTGCGCTTCAACGGAAAGGGGAAAAAGATTCGCAAACCTCGGACTATCTACTCCAGCCTCCAGCTGCAGGCGCTGAACCGCAGATTTCAGCAGACGCAGTACCTGGCGCTGCCGGAGAGAGCAGAGCTGGCCGCGTCTCTGGGGCTCACACAGACCCAGGTCAAGATCTGGTTTCAGAACAAACGATCCAAGTTTAAGAAGTTGATGAAGCAAGGCGGAGGAAGCATAGACACGAGCGCACTGGCCAATGGCCGCGGACTGAGCGCCGGTTCGCCCTCCGTGGCGCCCGTATGGAACTCATCCGCTAGCGTTAAAACCTCCGTCGGCACGCCGAGCTCGTACATCCCGAGCTACACCTCTTGGTATCCCAGCACGCACCAGGACTCTATGCAGCAGCCGCAGCTCATGTGAAGGCAGTGCTTAGCGGACCCCGCCCCTCTTCCTTCGCGGAGGACCCGGATGAGGGGAGCACGCGACCCTGCCGCCCGGCTCTCCGGCCCTCAGCCCATACAGTACAGACTGCGATCACACACCGCGATCACACCGGAGCACACCGCACAAGCACACCGACACACCGGCAGCAACAGCCTGGAGGCCGAGACACTGAGAAAGAAGCGTCTGCGGCGGAGGAACACGTTTCCCTCCTTTACTTTCAGAGCGGATTTCCCAGACAGTTGGGTCAAATGAAGCTGCTCCTGATATTTCCTTTTTACCTGACATTTtactgtgtgtaaaacattatataaagctgtaacacgtgaaaaaaaaaatatttactcatGTTTCAGACTGGCATTTTTGCCTGGAGAATGGAACAAATGCGTTTATTTGGCATGATTTACCTAAAAGCAACAGTCTGCCTTTTTACAGCCGCCAGTTGTTAATATCTACACGCAAAAAACATATCTTACATAGACTATATTTTCTACAGAGAAGGGGGAATGGGTTGTGCTGTGCCAGGCTCTGAGCATTTGGAATAGTATAGGGTAAAATCATGCGAGGAGCCTGGTTCTCCTGAGTCCAAAGAGCAAATCTTTATAGGCTAACTTAAGTCATTTTGGCAGTGTGGAGcttctttgtgtgtttatttaaagtaaCTTATTTAGATTTCGTTTATGTCCgtttgtatgtttatttaaaatgaatgttctTTAAAAGATATGGCTGCACTAAAGTGAGCAACACTTTACTTTGATTGGAGATGAATTTAAGCCGAGTGCTTGTATCCCCATCCCAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99680 lncRNA downstream 128901 16965511 ~ 16966173 (-) True G83953
TU99271 lncRNA downstream 685181 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 718788 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 866637 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 1018454 16074499 ~ 16076620 (-) False lmo7a
TU99803 lncRNA upstream 29328 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 209587 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 226063 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 234510 17332492 ~ 17346350 (-) True G84189
TU99971 lncRNA upstream 273997 17371979 ~ 17373212 (-) False sp3a
XM_026913150.2 mRNA downstream 23266 17052057 ~ 17071808 (-) True itga6a
XM_026913152.2 mRNA downstream 23266 17053438 ~ 17071808 (-) False itga6a
XM_026911166.2 mRNA downstream 55261 17028237 ~ 17039813 (-) False mettl8
XM_026911173.2 mRNA downstream 55261 17028237 ~ 17039813 (-) False mettl8
XM_026911159.2 mRNA downstream 55261 17028237 ~ 17039813 (-) True mettl8
XM_026913130.2 mRNA upstream 32008 17129990 ~ 17148675 (-) True hat1
XM_026913164.2 mRNA upstream 78699 17176681 ~ 17209898 (-) False dync1i2a
XM_026913162.2 mRNA upstream 78699 17176681 ~ 17209898 (-) True dync1i2a
XM_026913163.2 mRNA upstream 78699 17176681 ~ 17209793 (-) False dync1i2a
XM_026912996.2 mRNA upstream 118739 17216721 ~ 17249832 (-) True ppp1r9ala
TU99754 other downstream 55231 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 874208 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2017879 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2257681 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2541615 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 2383138 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2470769 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3128746 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4038064 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 4038064 21136046 ~ 21144621 (-) True phgdh

Expression Profile