RNA id: XM_026913146.2


Basic Information

Item Value
RNA id XM_026913146.2
length 2740
RNA type mRNA
GC content 0.44
exon number 18
gene id stk39
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18670051 ~ 18703548 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGCGACCTCCGCTAGAGCCAGCTGAGGACGCTGTGACGGTTAGCCGCTAGCATAGCCGCTCCTGGCTGTAGCGCAGCCATCCGCAGCATCATGGCGGAGCGAAGCCACTCATCTGCGGCTCCGGCTACCGGCCACAGTCCGCAAGCGGGAACCACAGCCGGTTGGCCAATTGTGAAGGAGGCGTACGAGCTGCAGGATGTTATAGGCAGTGGAGCCACAGCAGTAGTCCAGGCTGCTCTCTGCCTCCCTCGACAAGAACGTGTGGCCATCAAGAGGATCAACCTGGAGAAATGCCAGACCAGCATGGAAGAACTACTGAAAGAAATCCAAGCCATGAGCCAGTGCAACCATCCGAATGTAGTGACATATTATACCTCATTTGTGGTGAAGGATGAGCTTTGGTTGGTTATGAAACTATTGAGTGGAGGATCAGTATTGGACATCATAAAGCACGCATGTAGCAAAGGAGAGCACAGAAATGGCGTATTGGATGAACCCACGATAGCTACTATTTTAAAAGAGGTCTTAGAGGGTCTTGATTACCTGCACAGAAATGGACAAATTCACAGGGATGTGAAAGCTGGGAACATCCTGTTGGGAGAGGACGGCTCAGTGCAGATAGCAGACTTTGGGGTGAGTGCATTTCTGGCGACCGGAGGAGACGTAACCAGACATAAAGTTAGGAAAACTTTTGTGGGAACTCCATGTTGGATGGCTCCAGAAGTGATGGAACAGGTACGAGGTTATGATTTCAAAGCTGACATTTGGAGTTTTGGGATCACTGCCATAGAGTTGGCCACAGGATCTGCACCCTATCATCGATACCCACCTATGAAGGTTTTAATGCTGACACTGCAGAATGATCCCCCAACCTTAGAGACAGAAGTGGAGGATAAAGAGATGCTAAAGAAATATGGGAAATCTTTTAGGAAACTAATAACTCTGTGCCTTCAAAAGGACCCGACTAAGAgGCCAACTGCATCAGAACTTTTGAAATGTAAATTCTTCCAAAAAGCCAAgAACCGGGAATACTTGAttgaaaagctgctttgtaaagGACCAAATATAAGCCAAAGAGCTAAAAAGGTCAGACGAGTGCCAGGATCAAGCGGTCGCTTGCACAAGATGGAGGATGGAGACTGGGAATGGAGTGATGATGAGATGGATGAAAGGAGTGAAGAAGGGAAGGCAGCTGTTAATCAAGGAAGGTCACGGAGGGTCAAAGATGAAAACCAGCATagGGAAGTGAATGCCAACAATGTCCCTATAGAAGGCCTGTCCATTCAGCATCCCCAGATTCAACCTCTGGAAAAAAGCCCAAGCACTCAGGGTGCTGTGAACATGGTCCTGAGGCTAAGgAACTCGAGGAAGGAGTTGAATGACATACGGTTTGAATTCACTCCAGGCCGAGATACTGCTGACGgtgtttctcaggaactgtTTTCTGCTGGTCTAGTCAATGGACATGATGTTGTAGTTGTTGCTGCTAACCTTCAGAAAATTGTAGAAGACCCAGTTACCTATAAAGTGTTGACCTTTAAACTGgcATCTGGCTGTGAAAGTACAGAGATCCCTGACGAGGTGAAGCTAATTGGCTTTGCCCAGCTCAGTGTTACCTGATGGTGTACGTCTgagggaagaggaagaggatgggAGGAGGAAGAAGGCTTTGAACGGAAAGTCTGAATGCTAACGAAAGTGCAGACTGGGGGTTTAGGAGCCATCTCCAGCTTACTCCCAGCTCAAGCTCCTCTCTCAGCTCTATCCTCATTTTAATTACCTTCTAACTGTCAATAACTAAGCATTCTGTCAATAactaaagaaaacacacacagtcagcttCCCTTGCCCTACATTCAGCTCCTGCAATGTCTTTCCTCAACATTCCACCTCCCTCTTCCCCTCAGCCCTGCTAACTTGATGCTCTCAGGTGGCTACAGCCagcaatcacaaaaaaaaagaattagagtttatctcattattattgtgttacATTTGCTTTCAGcaaagctattattattattattattattattattatttattggcAAAAGCCTTCAATTTTCCTTTCCTTGTTTTGAAAGATGAACTTTTCTGATGCGCACATTAACACTGCAAAACTTGGTGTTAAGTCAGTTATTTGAAGTCCTCCTTTCTTccaaatgtaatgtaatcttatttatgaaaaataagcACATTATTATTCATGATTCTATAATTAATACTGTTTTAAAAGTGAACCGttctgtactgtatgtacacaaaatatttaatccACTAAGAATGAATGAAACCGTTTTCCCCCCCAGGAAGTAGGAGGCGAGAACTGAATGCTGCCATGTGCAAATGTACTTGCTTATTTTTCAGGACAGTGTTGACGCTTAACTGCTAGTGGTGCCTTGTTCATTAATCCGTGCCTAAGAACACAGGTAACAAGCCGGAGCTGTTTAAAGCATAGACTGCTTTATGTTGTTAAACCAAGGAGAATTGCTTTTTCAGCTGATAGCtccatttaaaagtattttcacTGGCAAATGGCTTATGTTGAAAACGACAAAGCTTTAATGCACTTTGATTTTGGATTGTGCAATGTACACGTGCTTTTCCCCTGGAAACCCTCCAGATTTAACCTCTAAAGCTTTGTTCAATGACAGAAAGGTCATTATAACTGTAATGCACACCTGAACTGTGATATGATGGGAAAAAGCCAGCTGCTGAGTATAAAGAAGTAGCCGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101041 lncRNA downstream 1840 18667991 ~ 18668211 (-) True G85069
TU100942 lncRNA downstream 114186 18540353 ~ 18555865 (-) True G84975
TU100817 lncRNA downstream 532968 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 534437 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 536362 18133402 ~ 18133689 (-) True G84880
TU101156 lncRNA upstream 209842 18913387 ~ 18915283 (-) False LOC113526313
TU101194 lncRNA upstream 334682 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 347853 19051398 ~ 19053050 (-) True G85211
TU101381 lncRNA upstream 565117 19268662 ~ 19268952 (-) True G85382
TU101476 lncRNA upstream 760607 19464152 ~ 19478394 (-) True G85459
XM_026947055.2 mRNA downstream 172642 18468952 ~ 18497409 (-) True csrnp3
XM_026947069.2 mRNA downstream 188758 18468952 ~ 18481293 (-) False csrnp3
XM_026947062.2 mRNA downstream 189004 18468952 ~ 18481047 (-) False csrnp3
XM_034304773.1 mRNA downstream 290688 18373177 ~ 18379363 (-) False slc38a11
XM_026913030.2 mRNA downstream 290688 18373177 ~ 18379363 (-) True slc38a11
XM_026909981.2 mRNA upstream 48369 18751914 ~ 18756220 (-) False spc25
XM_026909992.2 mRNA upstream 48369 18751914 ~ 18756142 (-) True spc25
XM_034304900.1 mRNA upstream 48369 18751914 ~ 18755996 (-) False spc25
XM_026913256.2 mRNA upstream 211087 18914632 ~ 18968492 (-) False LOC113526313
XM_026913259.2 mRNA upstream 211087 18914632 ~ 18968492 (-) False LOC113526313
TU99754 other downstream 1630208 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 2449185 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3592856 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3832658 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 4116592 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 777575 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 865206 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 1523183 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2432501 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2432501 21136046 ~ 21144621 (-) True phgdh

Expression Profile