RNA id: XM_026913150.2


Basic Information

Item Value
RNA id XM_026913150.2
length 4692
RNA type mRNA
GC content 0.44
exon number 25
gene id itga6a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17052057 ~ 17071808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCCTAAAGCGCAGTGCGCTCCACAGGAAAAGAGCGCACATATATTCCCACTGTGCCCATACAAACACTATGGAGATTTCAGGACTGTGGATTTCTCTCAGTGTGAGgatttctctctttttgctACTATGGGCAGGTGCAAGCGCATTTAACTTGGACACAAAAAACGTGTTGAGGAAGAACGGGGATCCCGGCAGCCTCTTTggtttctctctcgctctgcaCCGGCAGCTACAGCCAGTGGATAAGAGAATACTTCTAATTGGAGCTCCCAGGGCCAAAGCTTTATCCAATCAGGGTGCGAACATCACTGGGGGTTTGTACAGCTGTGAAATCACTACTCATTCGGATGACTGCAATCGGATTGAGTTCGACAATGATGCTGATATGCGTGTGGAGAGTAAAGAGAATCAGTGGATGGGGGTGACTGTGCAGAGTCAGGGGCCAGGGGGAAAGATTGTGACTTGTGCTCACCGGTACCAGCGACGGCTGTTTGTAAACACACCACAGGAGTCACGGGACATTACCGGGCGCTGCTACGTACTCAGTCAGGATTTCAGCATTGATGGCCAGTCAGATGAAGATGGTGGCAACTGGAAATTCTGTGAAGGTCGTGCCAGGGGTCACGAGAGGTTTGGTGCCTGTCAGCAAGGTCTGGCTGCAACTTTCACCAAAGACTACCATTACGTCATTTTTGGAGCCCCAGGAGCTTATAACTGGAAAGGAATTGTGCGAGTagagcaaaaaaacaacactctCCTCGAAATGGGCTTCTATGATGACGGCCCATATGAGGTTGGGGATGAAAGCCGCTTGGATCCAGAACTGGTGCCTGTACCTGCTAACAGTTACTTAGGTTTCTCTCTGGATTCTGGCCACAACATTACTGAGAAGGGCAAACTGATTGTGGTGTCTGGCGCTCCGAGAGCCAATCACAGTGGAGCAGTGGTGCTGCTGAGGAAAGAGGGTGAGGTGTCCACCATGCTGTCGCCTGAGTATGTGCTAGAAGGACCTGGACTTGCCTCTTCATTTGGATATGACGTAGCAGTTGTGGATCTCAATGGAGACGGATGGCAGGACATTGTGGTGGGAGCTCCTCAGTTTTTCCAGAGAGATGGTGAGGTTGGGGGAGCGGTGTATGTCTACATCAACAAGGCCGGAAAGTGGAGCGCTGTCGTCCCCACCCGCCTCAATGGAACTAAAGACTCAATGTTTGGACTGGCGGTGGACAATATTGGAGACATCAATCTGGATTCCTATGAAGATATTGCAGTTGGTGCTCCTTATGCAGATGCAGGCTCTGGCAGAGTGTACATCTATCATGGATCAGCTTATGGCATTAACACCAAACCAGCTCAGATTCTGGAAGGTAGACCTCATGGCATAAACATGTTTGGCTATTCATTGGCTGGGAACATGGACTTGGATGACAACTCCTACCCAGATCTTGCCATTGGATCTCTGTCTGatgctgtgtttgtgtacagGGCCAGACCTGTCATCAGCATAAAGAAGGAAATCAAGGTTACACCAAAGGAAATTGACCTGACAAAGAAAACGTGTGGAAACAGTATTTGTTTGAATGTTGAAGTCTGCTTTACCTATAAAGCAAATCCTGTTACTTACAACCCCAAACTGACCATTTCCTACATGCTTGAGACAGAGTCACAACGCAGAAAGCAGGGGTTGCACTCTAGAGTGTCCTTCCTGGATAAAAAGCCAACTGATCAAGATTTCCAGTCTACAGGCACATTAGACCTGAGAGGGCAGAACAAGAAATCTTGTCACAAAGTCAAACTCCGACTGCAGGAGAACATCAAAGACAAGTTGAGAGCAATCCCCATCGAGGTGTCCTGTGCCATTGAGAGTGCTAGGAGAGGGAAAAGTCCGACCTCACTACCAGAGCTGCTGCCTGTGCTGGACTCAAATATACCAAGCAAGACCACCACTGAAGTGAACTTCCTGAAGGAGGGGTGTGGTTCTGACAACATATGTCAGAGTAACCTGCAGCTCCAATACAGATTCTGTTACCGAGAGTCCAACCAGGACATATTTCCTCCATTACCTATGGAGAATGATATTGCAGTGGTGTCTCTGAGTGACCAAAAGGACATTGCTCTGGAGGTAACAGTGAAGAATAGGAATGGAGATGATGCTCATGAAGCCAAACTAATGGGATGGTTTGGTGATTCGCTTTCATACTCTGGATTCAGATCTCAGAAAGCTACAGACAAGCACGTGATCtgtgcagccaatcagaatggcTCACAAGTAGACTGTGAACTGGGGAACCCATTCAAAAGAGATTCTGAGGTCACTTTTTACATTATCCTGAGCACTGCCAGGATCTCCCTCCACACCACTGAGGTTGAGGTTGACCTCCAGCTAGAGACAACGAGTCTGCAGGGGGGTTTAGAGAGAGTGAGGGCTAAAGCTAAAGTCGTGATTGAACTTCTGCTATCAGTGCAAGGGGTTGCCAAGCCCTCACAGGTGTACTTTGGAGGGAATGTTAGAGGAGAGAGCGCCATAAAATCAGAGGAAGAAGTTGGCAGTTTGATTGAATATGAATTTAGGGTAATGAATTTAGGCAAGCCACTGAAATCATATGGCACAGCCTCCATCAATATCCAGTGGCCTAAAGAAGGTGCTCTGGGGAAATGGCTTCTGTACCTGGTGAAGATCACCTCGAAAGGGCTGGAGCAGATCACCTGCTCACCAGAGAATGAGATCAACCCAAATGGCCTGATTGAAGGATCCACTTTCTCCAGAAGGAAGCGTCAGGTGGACCCAAGCAGGACATCTGAAGGGAGGAAAATATCTCTTTTCACagataaaagaaaatacaaaactcTGTCATGTGCTGGGGATGTGAAATGTGTGGACATCAAGTGCCCTCTACAGGGCCTGGACAGTAGTGCGCACATTGTACTGAGGTCTCGCCTTTGGAACACGACTTTCCTTGAAgatTATGCCTCATATAATTATCTCGACTTGATAGTGAAAGCCTCAATCAGTCTTGATGTTTCTGCTAAGAACATTGTGCTGAAGAATCCTGAGACACAGGTGAGATTGACTATCTTCCCTGAAAATACAGTGGCTCACTATGGTGGAGTGCCATGGTGGATAATTCTAGTGGCCGTACTAGCAGGAATACTGATGCTTGCTCTGCTAGTGCTTCTACTCTGGAAGTGTGGATTTTTCAAACGTTCCAAGTATGATGACAGCATTCCTAAGTACCATGCTGTGAGGATCCGTAAGGAGACGCGCCACTTTACAGATGAAAGCATCATGTTTGATCCATTTGAGAAGAAGCAATGGATGACTATATGGAATGAGAATGAAAGTTACTCCTGAGACTTTTACCTCACTAATGTGAGAGACTTTAGGACTTTCTGGAGTCCACTAAATATAATGGAGCCTGGATTCAGGACTTTGCACAGTCTGTGTTGTTACAATgaagaaacacaaaacaaaagactCCTTTCATGCACTGGTTTGTAACACAACAAAGGTGTCAAGTCTTAAAATACCAAGCAAATGATAAGTGTCATTTagagatatttttttgttttgatatttGTATACAGAATTGGGACCAGCCTTTAAAAATGCCTATTTGTACAATTCTGGATGATTACTGGACTACTGTAACTGattttaaatctgtaaatattgaACTGTACTTGCATagtgcttatttattttctgtcttatttaaTTAGCCAAAGGTTCTCCAGGTTCTTTCTAAAACTGTGAAATTTGCTTAAAATACAAACGTCAAGCAGATTATAAGGATAAAATAACCTGATATGCACAATGGATGAAAGCAATCTAGCACACTATATGGCAGGGTTTTATATTTGGGGATTCGCTGctcatatttatgcatatactgtatgtgagtTTTTGCTGCTGAGTAGATATTAGATCAGAAACAGATGTGGCTAGGAACTGCAAAAGTAAACTGATTATTGGGATCAAGAAGAGAACATACAAAACAAGTCCAAAGTACTTATCCAGGAATACACAGTCTGACTACTGTGCGTTTCAGTGCCTATAGGTGTGTGTTTCCAGAAGTACCGTATCCATTTgattttactgaagaaaaactcaGCAGGTTTAATTACCAGGAACTTTGGTAGCTGATGTACAAGTACATATGGACTGACTGAATAACTTTGAATGTTTTGTTGTACCCCTTAATTAGATTACTCTGTTTGTATTACAGTATGTGATCTGAACCAGTAAATCTGTAGTTTGCGCTCAGTGAACTTTAGTAATATTTGCAGCTGAAAATGGAGATGACGCTTCATCTCACTGGCCATGTTATAGATGCACCTACTCTAGTTAAAACCAATAAGCCATTAAGTAACATATAAAGCATGATAGGgtatgctattataggaaaataatcagttatggggtggtgtgatgccatAACCACCCACAAAACACCACATCCCTAATCGTTTTGTTCcttctataccacagcaatttgccaatgattacaattttttattaattcatgaacaacacatcatactttttatccctttattgttacatttaaggGTTTGGAACTTTAGCacaacaagttagttcctgttatctaacttgttagttcctgtaattcttggtccctcaccagcctctcttttaaatttaataagacggaaaaaaaaaccacgca

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06485 ITGA6, CD49f; integrin alpha 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99680 lncRNA downstream 85884 16965511 ~ 16966173 (-) True G83953
TU99271 lncRNA downstream 642164 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 675771 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 823620 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 975437 16074499 ~ 16076620 (-) False lmo7a
TU99803 lncRNA upstream 55502 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 235761 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 252237 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 260684 17332492 ~ 17346350 (-) True G84189
TU99971 lncRNA upstream 300171 17371979 ~ 17373212 (-) False sp3a
XM_026911166.2 mRNA downstream 12244 17028237 ~ 17039813 (-) False mettl8
XM_026911173.2 mRNA downstream 12244 17028237 ~ 17039813 (-) False mettl8
XM_026911159.2 mRNA downstream 12244 17028237 ~ 17039813 (-) True mettl8
XM_026912782.2 mRNA downstream 26527 17002118 ~ 17025530 (-) True tlk1a
XM_026911738.2 mRNA downstream 376790 16617571 ~ 16675267 (-) False mylka
XM_026913117.2 mRNA upstream 23266 17095074 ~ 17097982 (-) True dlx1a
XM_026913130.2 mRNA upstream 58182 17129990 ~ 17148675 (-) True hat1
XM_026913164.2 mRNA upstream 104873 17176681 ~ 17209898 (-) False dync1i2a
XM_026913162.2 mRNA upstream 104873 17176681 ~ 17209898 (-) True dync1i2a
XM_026913163.2 mRNA upstream 104873 17176681 ~ 17209793 (-) False dync1i2a
TU99754 other downstream 12214 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 831191 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1974862 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2214664 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2498598 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 2409312 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2496943 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3154920 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4064238 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 4064238 21136046 ~ 21144621 (-) True phgdh

Expression Profile