RNA id: XM_026913157.1


Basic Information

Item Value
RNA id XM_026913157.1
length 2045
RNA type mRNA
GC content 0.52
exon number 8
gene id wipf1a
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17465688 ~ 17472291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATGGAACAGTGTTCACAACTGTGATACTTACTTCTCTACAACTTCAACCTCGGGTGAGTCCATCTTTTCCATGAATAGATTGAGGGGAAACTCAggagagaacagagaggaaAGGGAAGCTTTGGAGGACAGTGAGGGCATCCCTGCCTGTCAAAGgTAAagcgtgagtgagtgagcaaCACAGACTTAATATGCCTGGTCCTCCACCCCCACCAGCACCCCCTCCTCCAACCTTTGCTTTGgcgAATACTGAGAAACCATCCCTGTCCAGAACTGAGCAACATGGCAGAAATGCTTTACTCTCAGATATCAACAAAGGCACCCGCCTGAAAAAAACTGTCACCAATGACCGCAGTGCTCCAGTCCTTGATAAGCCCAAAGGGGGTGGGGCttctggtggaggtggtggtggtggtggtggtggtttagGAGGTGGAGCTCCAGGTGGACTTGGGGGGCTGTTCCAGGGTGGGATGCCAAGACTAAAATCTGCAGGAGGTGGCCCTGCAAGGCCACCCATGCCACCCACCAGTGGGAGATTCCCAGCACCAAGTGGAGGAGCGCCTCCTCGTCTCCCTGACACTCCTTCTGGGCGATCGAACATGAGCAGGGGCAGTGTTCCACCTGTGCCTTCCTCTACATCTGCCTCGTCACGCAGTCCAAATACTGGTGGCCCTCCACCTTTGCCAGGAGGTCGATTCCCAAGCTCCCCTTCTACACCACCAACACTGCCAGGAGGTCGATTCCCAAGTTCCCCTTCTACACCACCAACACTGCCAGGTCGGCGCCCCAGCACTCCTGCAAATCCTGCTCCCCCTGGCCGCCAAACATCTTTACCACCACCACCTGTTCCCTCTAGTGCCCGTCCATCTTCTAACACATTTTCCTCTGGATCCTCAAATGATtttccccctccaccaccaccagtAGGAGGAAACAGGTCATCGTTACTGCCACCTCCTGTTCCCTCTAGTGCCCGGCCACATTTTTCCACAGGCGACTCAGATGATTTTCCCCCTCCTCCACCATCCATAGGAGGACATGGGGCATCTTTTTCAGCACCTCCAGTTCCGCCTAGTAGCCACCCTCCACTTCCTACACCTCCTTCTGGATCAGATGAttttcctcctccaccaccacctgTAGGAGGAAGTAGAGCATCATTTTCTGGTAGTGGGTCTCCACTGCCACCACCACCCCCATCAGGAAGTAAACCAGGACCAAGATCTATGGGCGGTGCCCCACCACCACTCCCTTCAGGTAGAGGAGACCTGCCACCGCTACCCCCTACACCAGCAAAGGAGCCAACCAATACAACTCCTCATAGAAATTCTTTTAGTAACCCGCCACCTGTCCCACGACCTGGAGGGTCTGCCCCGCCACCACCTCCACCCAGTTCAAGACCTCCACCAGCAGGAAGATCCCCATCTATACGATCTAGTCCTCTTCCACCTCCCCCTGCAGGGGACAGCAGAGGAGGTACTCCACCTGCACCTCCTCCTAATCACCCTAGTGGTAGTCGAGGAGCTGGCAGACCTCCCCTTCCCCCAGATAGGCCTGGGGCAGGAGGGTTgcctcctccccctcccccttccATGGGCAATGGCAACCAGAGCTCACCTCAAAACAGCACAGATGAATGGGAGATGAGGTTTTCCTTCCATGCAGTTTCTGAGCTGCCCCCACCTGAGCCTTACATTTCCATCCCTAAGACCTACCCCAGCAAGGCTGGTAAGACTGATGGCAAAGGGTCATTACCGAGGGAAAGAGGAGCTCCTCCACTGCCTCCAATACCCAGATAAACAAAAATCAGTCATGCCACTGCTGTATTACTATTCACTTCTTAAGCACAGCTTCAAATTTCTTTTTCTGAATGTTGCTGAGAGTTTTAAATTCcacatgtgagagagagtgtgtgaactttttttgagtatattacatttttaataaagacaaatTAGAACACAAACAGAGAttgaaataacattttatgttCTATTGTTATTGCTGAAAAGGCTAAAATAAAACACCTTTTATAAGACA

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100003 lncRNA downstream 34257 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA downstream 34366 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA downstream 34366 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA downstream 34366 17408749 ~ 17431322 (-) False LOC117597450
TU100005 lncRNA downstream 73741 17391684 ~ 17391947 (-) True G84227
TU100221 lncRNA upstream 223073 17695290 ~ 17697086 (-) False evx2
TU100224 lncRNA upstream 254436 17726653 ~ 17727997 (-) True G84394
XR_004578231.1 lncRNA upstream 268420 17740637 ~ 17744020 (-) False LOC117597384
TU100243 lncRNA upstream 268422 17740639 ~ 17744025 (-) True LOC117597384
TU100258 lncRNA upstream 361158 17833375 ~ 17833589 (-) True G84411
XM_026912530.2 mRNA downstream 1412 17449880 ~ 17464276 (-) False gpr155a
XM_026912529.2 mRNA downstream 1413 17449880 ~ 17464275 (-) True gpr155a
XM_026913145.2 mRNA downstream 22166 17437158 ~ 17443522 (-) True cir1
XM_034304695.1 mRNA downstream 84517 17372058 ~ 17381171 (-) False sp3a
XM_026947803.2 mRNA upstream 898 17473115 ~ 17482009 (-) True LOC113547453
XM_026912706.2 mRNA upstream 13831 17486048 ~ 17523051 (-) True chn1
XM_034304693.1 mRNA upstream 13831 17486048 ~ 17523045 (-) False chn1
XM_026911759.2 mRNA upstream 57720 17529937 ~ 17556165 (-) True atf2
XM_026911770.2 mRNA upstream 84602 17556819 ~ 17560073 (-) False atp5mc3a
TU99754 other downstream 425845 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1244822 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2388493 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2628295 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2912229 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 2008903 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2096534 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2754511 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3663829 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3663829 21136046 ~ 21144621 (-) True phgdh

Expression Profile