RNA id: XM_034304201.1


Basic Information

Item Value
RNA id XM_034304201.1
length 3523
RNA type mRNA
GC content 0.41
exon number 19
gene id LOC113540058
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2481594 ~ 2522385 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCCCTCGCCGGGGATATATAAATGCGAGACAGTAACTTCTCacctgttctcacacacacacacacacacacacacacatagtgtatCCGGGTGATATCATGGCGGATGATCCGCTGGTTGGGGCAGTGGACCAGGGGACCAGCTCCACAAGGTTtctggtGTTCAATGCTAAAACTGCTGAGCTTGTCAGTCAGCATCAGGTGGAAATTACACAGAGTTTCCCCAAAGAAGGATGGGTGGAAGAAGATCCCAAGGAGATCCTACAgtctgtgtatgagtgtatggaGAGGACCAGTGAGAAACTCGCTCAGCTCAATATTGACATCACCACcattaaagCCATTGgagtgaccaatcagagagagaCGACATTGGTGTGGGACAAAGAGACTGGAGAACCTCTCTACAACGCCATTGTGTGGCTGGACTTGAGGACTCAGTCCactgttgaacatctcattgaGAAAACACCTGGAAAGAACAAAAACCACTTAAAGCATAAGACAGGTTTGCCCATCAGTACCTACTTCAGTGCGGTGAAGTTGCGCTGGTTGATGGACAATGTGGTGGAGGTGGATGAGGCTGTGCGCTCTCACCGTGCCATGTTTGGAACCGTTGACTCCTGGCTTATATGGAGTTTAACTGGAGGGAAAAATGGTGGTGTTCACTGCACAGACGTCACCAACGCCAGCCGCACAATGCTGTTCAACATACACACCATGGAGTGGGACCTGGATCTGtgcagGTACTTTGATGTTCCTGCTGAAATCCTTCCGGAGGTTAGAAGCTCTTCAGAAATATATGGTTACACGAGCTCAGGTTCACTGGTGGGTGTGCCCATCTCTGGATGTCTGGGCGATCAGTCGGCTGCTCTTGTGGGACAGATGTGCTTCAAAGATGGTCAGGCCAAAAACACATATGGAACCGGTTGCTTCATGTTGAAAAATACTGGCATCAAGCCTGTGATGTCAGAACACGGCCTCCTCACAACAATTGCCTACAAACTGGGAAAGGACAGACCTGCTCACTATGCACTCGAGGGATCCGTTGCAATTGCTGGAGCAGTAGTGAGGTGGCTAAAGGACAATCTGGGAATCCTCAAATCCTCTTCTGAAATTGAAAAGTTGGCTGCTGCAGCTGGGACATCTTATGGCTGTTATTTTGTTCCAGCATTTTCTGGGCTTTATGCTCCCTACTGGGAACCCAGTGCTCGAGGGATTATCTGTGGCCTGACACAGTTCACAAATAGGAGTCACTTGGCTTTTGCAGCACTGGAAGCAGTGTGCTTTCAAACGCGAGAGGTTTTGGATGCGATGAATCGAGACAGTGGCGCTTCGCTTACTCAGTTACAGGTAGATGGAGGAATGACGGCTAACAAATTACTAATGCAACTACAGGCTGATATCCTCTGTATCCCTgttgTGAGACCCTCTATGTCTGAGACTACTGCACTGGGGGCAGCAATGGCTGCCGGAGCAGCTGAAGGGGTCAATGTGTGGAGCCTAAATCCTGAGGACATGACCTGTGTAACCTCTGAGAAATACCAACCTCAAATCAAACCAGAAGAGAGTGAATTTCGATACGCAAGATGGAAGAAAGCCGTCCAGAAAGCCATGAACTGGGAGACTATGGATCCACTTTCTAACGAGAATGGtgaaaactcacacacacacacacacacacacacacacacacacacacacacacgttgttaAATGGACAACACATTGGCCCAAGCGTTCGCAAATTTCACatatagtttctttatttatcaatctttaGCATATCCGTATGATCAAACTCACGTCTGGTtggtgtggctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtaaatttgagcATACCATTTTAACAACCTGAAAAATGTGCAGTTAAATCAGCAAAATCAATATCATCAAAACTTACAGCAAGTATAGcaattgtgaaataaataataaaaaagcatatAACACTGATTGAGTAATACAGGCTCATTTGCATACAGGAAGTATGACAAAGCTCTCACCTTGGTGCACAATCTTGATGTCAGCCCCTGTTTTTGACCTTATTACATAATTTCATATTAGTATTAAATCAGTGCTATTTTATTCTTTGCAGTATTCTGCTTATTTagcatttgagttttttttcttcatatgaAAGAAGGCTGTTCACTGgctcaaaaaaacaacaacctaaGAACACGTCCCCATTTGTCTATGTATGTCTCAATGATAGCATTAATTGTCAGCTAAATTAAATGCAACATTGATGAATAAGGGCCAATGATATGGTCATCAGTTTATCATGGTCTCCTCACATTTACAAAGAAGATACAACTAAATGCCATATAACACTGCAGGTGGCAGTGCAAAATTTATCATTCACTTTATCATTAACAGTACAGAGTATATTAGTTTTCTGTATCAGTATAATACTCAGTGTAACCTCACACCTTTAATCCATTTTACCTTTAATCCATTTCAATGGTAATGTAAATTTCAGACTGATCAATTTATTACTGAGTTCAGCTTTATTAGCGACTCCACttaattttattgattaaaCTGCCGTAGAATGGAATTGACACGTTTGAGCCTTGAATGAATAGACAATGGGAATGTGAGTATGTAAATATTGCCTTGTTAAATTAAAAGctggttatttgatttattgGTAGCAAACAGCTGGCTTGTTTTTACATCATACATCAATTTTATCCAAGCAATTTAATTCTCCAGTAAATTATAATTCTCAATTCTGTTATGCCAGAAGACTTTCCATTACTCCCACAATTCCTgaacccttaggacaaaataaagaagataaattaatttatagcTTCAGTGTGTTTGGTCTTGCAGATATTTCTTCGATATACATATCAGAAATACAAAcatgttaatttaattaatgaaaaacaaaatcattttttagtAAGTCAGGGAGACTGAGAGGGTCATGTCAAACTTAGTTTTACActattttctgttgattttgccCTTGGATATACCcgtattttttacattttatttttacttgtagATAAAttgaaaattacatttttccacCCAGGGGATGGACACTTTTGCGCTCAGCTGTTTTGTCTGCTTATTACAGACTTCTAGGCCTGATGTATTAAGATCCAAAATAATGAGCACTAATTTGCATGTGCAAAAAGTTTTGAGTATTCACAAAAAATAATTGCAGGAATTATGTCATGTGAAAAattaggtttttgtgtgtgcggTTTGTTCTTGATAGCTGCAGCAAGTTCAGATCTCTAAGGGATTCCTGGACGAGTCAAACTGAAACAGTACAAGCACGTAACTGGCTATAATGCCAATTAAAGGCTGAGACGCATCAAAAAACAGTTCAAAACATAATATGAATGCAAAATAAGAGTCCATGTTCTGTTTACCACTGGTTTTTAACTTCATTTTGAGATACAAATATATAATCCTCACTGTCCTTTCTTTATTAAAACttaataaatagtttaattttGTCATCAACTGGCA

Function

GO:

id name namespace
GO:0006072 glycerol-3-phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0004370 glycerol kinase activity molecular_function

KEGG:

id description
K00864 glpK, GK; glycerol kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90329 lncRNA downstream 32081 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 182090 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 208391 2271867 ~ 2274639 (-) True G76057
TU90223 lncRNA downstream 368431 2114190 ~ 2114599 (-) True G76013
TU90126 lncRNA downstream 536854 1945973 ~ 1946176 (-) True G75947
TU90634 lncRNA upstream 8269 2530654 ~ 2530992 (-) True G76333
TU90626 lncRNA upstream 34121 2556506 ~ 2559152 (-) True G76325
TU90615 lncRNA upstream 162131 2684516 ~ 2753806 (-) False ifngr2
XR_004578280.1 lncRNA upstream 370991 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 392015 2914400 ~ 2917047 (-) True G76400
XM_026936339.2 mRNA downstream 236410 2234810 ~ 2246620 (-) False LOC113540088
XM_026936346.2 mRNA downstream 236415 2234810 ~ 2246615 (-) False LOC113540088
XM_034304219.1 mRNA downstream 236421 2234810 ~ 2246609 (-) False LOC113540088
XM_034304213.1 mRNA downstream 236421 2234810 ~ 2246609 (-) False LOC113540088
XM_034304212.1 mRNA downstream 236421 2234810 ~ 2246609 (-) False LOC113540088
XM_034304837.1 mRNA upstream 144471 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA upstream 144471 2666856 ~ 2678131 (-) False il1rl1
XM_026945240.2 mRNA upstream 162123 2684508 ~ 2698756 (-) True ifngr2
XM_026945215.2 mRNA upstream 181975 2704360 ~ 2712278 (-) True LOC113545737
XM_026945224.2 mRNA upstream 183944 2706329 ~ 2712278 (-) False LOC113545737
TU90190 other downstream 433645 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 679385 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 808457 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 808845 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 820421 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 280502 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 282163 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 416936 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1291094 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2317575 4839960 ~ 4844879 (-) True G77283

Expression Profile