RNA id: XM_026938233.2


Basic Information

Item Value
RNA id XM_026938233.2
length 3766
RNA type mRNA
GC content 0.40
exon number 9
gene id crfb1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2775840 ~ 2799002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCTAGGATGATTCTACGCAACTGGAAATGCCCCAAAACCCCAGATCTGAAAGACTGGATGGATGGGATGATTGAAATCGCATCATATGAGAGCATGCTGGGGAGACTGCATAATAAAggggaaatgaaaaaaacatgggATCATTTCTGGCAGCACATTAAAATGGGggaGAATATGACCTTGTGGATCTGATTCCCAGTTAATATGAGGATACTGTCCCTgctatatgtttattttatggttCTCAGCACTCAAGGAATTGTTTCGGTCCCGGCACCAGTAAATGTTAAAGTCTTGTCGAACAACTTCATTCACATCTTGCAGTGGAGTCCAGGAAAAGGGACACAACCAGGAACAGTCTACAATGTGAATGTTGGTGTTAATCAGGCACTTAGCATCAGTGGTACATCTATTGACATCTCTGAATACATGAAACATATATACCTAAGATACAAGATCCAGCTTTGGGCGTCATTTGGCAACAGCTCATCGTCTAGAGTCAGCATTCATTTTTCGCCATACACAAGCACCATTATTGGGCCTCCCACGATATCTCTGTCTGGCTGTGGTGACTGCCTGAATATCAGCATTGATCTACCAAATCGCCCAGGTGCCCATGACAGCTTTTACAATGCTATATATTTTGACATATGGTGGAAGAAAGTCAGCGATGAAAAGgaTGTTTGCCACAGTCCACTTACTGATTACCAGAGTAAACATTTTATGCCATATTCGTTCATTCTGCGAAATCTTCAGCCGGGCGAGCGCTACTGTGTGCAAGCCCAGCCAAAGATCAACActttacaaagaaataaatcactgcACTCCTGCGCCTGTGAATTCTCCAGTCGAATAGAGCCCAGGGGGGTAGCGTTCCTGGCTGTTTGGGTTGTCGGCTCTGTAATTGTGGGATTGTGTTTTCTGAGTTTCATATTCAGCCTCGTCTACACTGGCTTTCTGTGCAAGCCAAACGTCAGACTTCCCAAAGCACTGATTGTTATTGTTCCTGGCTACTTCCTTTCCCCAGAGGAAACGTGTATATCAGTAGCTGATGTCGAGTATGGCATACAAATACACAAGCCCAAAGATCATCCCcacaagaaaaaggaaaaagaaaatggtcTCTATAAGAACAGTGATGATgtagatgaggatgatgatgaagacgAAGAGAGCCACCAGGGCTACATGGACCGAGCAGTTGACAGTGAGTCAGAGAGCACCGGCAGCAGGAGATCAGCATCTGTTTGTGAACTTGCAGAGAATCCGGAGGGAGGTAGCTTCGAGGACACACCCACAGATGCCAAGGAGACTTTATCGCTCTCTCAGCTTCAGTACGATGGGGTCAAAGGTTACAACCAAGCAGCTTTGCTTGATCCAGTTACGAAAAACTTAAATCCTCCTAATgcaaaagaagggaaaaaattaGGAGGACAAAtgaaggaagaagaagatgaaggagaagaagatTCTGGGAATGTTAAGCTGTGGTCAGTGGTATTGAAGTCCATGCAGCCGGAGGAAGAGGAGGCTGATGAACCGAGTGAAGCCAAAGAGCCTCTGTTACCTTTATTACTAAAAGAATTACAAGAAGATTCGCTCACAGCAGCAAAGCCACAGGCAGGAAGCTCTTCAGAACTTCACACAGCTCTTTTAttccacacacagacagaattACAGACCAGTCAAGAAGACgaaaatgacatttcagacacaagtgtgtgtgaccACATGCGAACAGGATACCTGGCGTCACACACAGGCACTATAGACACAGAAAACTATTCATCTGAGGACGAAGAGGAGGATTGTACATCAGGCTACATGACCAGATGAAGATGTGTAGTGTTTTATCATTAATTTggactgttttgtgttttcaagGCAGCTTTTATGTGCATTTTGCCAAATAATGTGCTGGGCTCGCAGCATGCTGTCCTCTGCTAGAGTGGCTCTGGTTCACAACCTAAAttactgaaattatttttttctcttggttTCTGTCAGGTAGATTTCCCTGTTTTTGTATAATGATCTGTAAAGCAGGAATATATAGTCTTAGGTTTGTGCCCCAGTTGTAAGTCGCTTTTAAGCTCCCAGGGTCCAGATTTATGTTCCTCACATTCAGAACTACACTCCTttagtttcactgtatttaTAGACTAATATGCTTTTAAGGGAGTTTTAAgggtttaaaaaagaaattgtagGTTTGGTCTAAATATAAATTATCTGAATCTAAATATAgatgtaaaataatataataatgcagtTTTACTTTTGCATCTGACTTTTATACACATGGTCTTAGAAGACATTCCTATTCCTTAAATATCTATAGATAAACAAGGATTTGGAGAATTTGTAGGAAATTAAACGGTTTCACTGTTTAATTAAACGGTTTCAATGTTTAATTTCTCCTAACAGGGTGGACAAATCTGCATGTTTGGTCATACAGGGCGTCTAGACAATTCATAACTCGTCTGGTCAGATGATGACTTGTTTGTTTGCACTGCTACACAGCTGGATGGGCTGAAAACAGCTGCATGACCTGGCAGTAGCTAAACACATTCATTAAGTGCTTATGTGCTTATGCCATGTAACTCCAGTGAAACATGCAGCTGGTCACTCGACCCTCAGAGgtgctgtgatttaaattactaatttatttatattttgggaaatgagttaagttcattagaaaatatcacaggggATACGCGCAAAAAtcataactttaaaaaaacagactgacaCACATGCCTGAGTCACGTAAACATCATGATGTCTACAGTGTCCTGGTTTATTCAGTGGGTGTCGTTATGGATCAGATGTTCCATTTTACAATTGTAGTTTgtggaataagcctttattcTAGGACCTGTACGTGCATGAAACATCAGGAACAACGACAGAGTTACACAGAAAGGGGTAAccatttttttgcactttattttagtttgatttaattgtttgtgtttgctACATCTCTCTTTAGATTGTGATAATTACATTAAACCAATTACAGAAGGAACCAAAGTAGCAACACTGTAGGATTTCCCTGATATGTTTATCTAAAACTTTAAACCCAATACATGAAGTAATGCAACAAATTGCTATAATCACTCACAggtgattctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacagagacttgCCTGTCAGTACAGAACTGTAAACTAGAGCCTACATGATCTACCAAAGTCTGATATGACAGCATTTATCACTCTTTTGAACTGCTTAGACATACACAGAACACAAACCTGCTATTCATAAACTCACATTTACAGTTTACCTGGTTTGCTTTTCATGACAGGATCAGACAGTATGCAAACATGTGAGACTAACTGATCAGACTGCACAGTAATGCGTTGTGTCgtgctgtaaataaaataaatgtaaattattccTTTTAATTGTGTtgagggatttttttatttatttattttttccaaagtCATGGTGTGGCAGCTGCTATGTGTAGTCTACACGCATCTATAGTTTAACTATAGACCCTGtaaataatagtttattttcaAATCGTTTGAGtgtgtcacattttttttggctgagAGAAAATTGTCCTCCTTTTGTACTTTTGGTCTGAATTGAAGCTCAGTAATGTTGAATATGAATGCTTTTGGATGTTTTGGATCTCCTCTATAGTATAAACTACCCATAAATCATATTTCCAGCAGA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0051607 defense response to virus biological_process
GO:0004904 interferon receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90615 lncRNA downstream 22034 2684516 ~ 2753806 (-) False ifngr2
TU90626 lncRNA downstream 216688 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 244848 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 324891 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 474900 2300721 ~ 2300940 (-) True G76060
XR_004578280.1 lncRNA upstream 102661 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 123685 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 145366 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 174551 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 174680 2965395 ~ 2966533 (-) False G76462
XM_026937180.2 mRNA downstream 3451 2760250 ~ 2772389 (-) True LOC113540598
XM_026938266.2 mRNA downstream 15634 2745336 ~ 2760206 (-) False LOC113541336
XM_026938295.2 mRNA upstream 10291 2801006 ~ 2805856 (-) False LOC113541352
XM_026938287.2 mRNA upstream 10291 2801006 ~ 2805855 (-) True LOC113541352
XM_034304223.1 mRNA upstream 33101 2823816 ~ 2829821 (-) False tyw5
XM_026942700.2 mRNA upstream 33101 2823816 ~ 2829565 (-) True tyw5
XM_026937158.2 mRNA upstream 128591 2919306 ~ 2920007 (-) True c5h2orf69
TU90190 other downstream 726455 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 972195 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1101267 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1101655 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1113231 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 12172 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 13833 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 148606 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1022764 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2049245 4839960 ~ 4844879 (-) True G77283

Expression Profile