RNA id: XR_004578243.1


Basic Information

Item Value
RNA id XR_004578243.1
length 1400
RNA type misc_RNA
GC content 0.38
exon number 3
gene id LOC113541352
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2801006 ~ 2805863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAACTGTGGTGTCTAAGCCACAGTGAGTCAACATTCATTGCCAATGAGACTGTGTGAGGGGCCTCGGGAAGgggagacagagggaggagagatggaaaagaggggaaggagagaggaagaaagggaGAGTGAATAAGAGAGCTGAAGCATGAAGCAGCCACGATTGTAAAGTCCTCAAGACTCAACAGctaatggaaaaaatattactGATGGGATTCAGTGTTATGTGAGCAGTTCACAGCAGACGCTTCATCAGTGAAGAGCCTTTTCCTGATCAAAACTTCAGTTTCACCTTTATGCCACTGCaacattttcaaacaaaaatattgaGAACCAAAAGACcacaataaattatttttaggtTAGTATTAACCTTTATTGATATTCCTTTATGTTTTTCCTCTAAAAGACTACCAACAGTTTGTTGATCTCAAAGATAAGGCATATTGTGGACCAGAGCTCcttgttttttctctgtgtgtctcacagAGAGAGGTCATAGAAATGAATGGTGCTGTATTCCACTGTCTGAGCTGCCATATTCCAAAAGTGAGTTTTCTCCAGGGTAAACATTAGCTCTTTGGAAGGTTACATAATCATGAAGCAGAAGGGAGTAAAGGATTCTTTGTGATCATGTCACATGTTCCTTCGTTCAGACCAACCAACTCATTTGTCCTTGAAGGCCAATGGCAGCAATGGAAAGTCTGTCCTCCTTCCCCTAAAGCTTTTAAAATGGGAGCAGACAGAGCAGATGGAAGTGTAGAACTGTTTCTTGAAATCAGTATTTTTGCCCCAGAAAACagatactttttcttttatttttcctgtcaGGTTTAAAAGGACCAAAGTTgagtttaataatttaatggCCAGCTACAGTATGTACTGTAGTACAGCTGAACTGAATGTCTCAGAAAACCCAGACtttttccctcaccatcctAAAAGCCCCAATAAAATGTGGCAAGAACTGCATGGAAGAAAAGTTTTTACATTAATTGCCAGGGCTGTCAGGGGTGGAACACCAGTTGGACTACGGCTTGTGTAGTGCTAATGTTTTTATGAGTGAAGTTGGAAACTGGCAGTCAATGCAGAGTTCTGGAAATGATCACAGATGATGGCCTGTGTTTTTCTAGTGCAGCTTGCATGAataaattttaagaaaaagaaaagaaataaaataaaatatctaaaagaaataaaataaattgcataGTATCATTTTACTCACATACAAAATTatgggaaaaaggaaagaataatGGAAACAGTAAGGACAAACATCTTGGGTAtatgcagaaaataaataatgttgtattaaaggaaaatagctttcattcaatttcatgtggtttaataaatgaaatgtgaaagaaTTGTAGaagacaagaaagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90615 lncRNA downstream 49081 2684516 ~ 2753806 (-) False ifngr2
TU90626 lncRNA downstream 243735 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 271895 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 351938 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 501947 2300721 ~ 2300940 (-) True G76060
XR_004578280.1 lncRNA upstream 87513 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 108537 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 130218 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 159403 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 159532 2965395 ~ 2966533 (-) False G76462
XM_026938205.2 mRNA downstream 3885 2775840 ~ 2799002 (-) True crfb1
XM_026938224.2 mRNA downstream 3886 2775840 ~ 2799001 (-) False crfb1
XM_026938233.2 mRNA downstream 12172 2775840 ~ 2790715 (-) False crfb1
XM_026937180.2 mRNA downstream 30498 2760250 ~ 2772389 (-) True LOC113540598
XM_026938266.2 mRNA downstream 42681 2745336 ~ 2760206 (-) False LOC113541336
XM_034304223.1 mRNA upstream 17953 2823816 ~ 2829821 (-) False tyw5
XM_026942700.2 mRNA upstream 17953 2823816 ~ 2829565 (-) True tyw5
XM_026937158.2 mRNA upstream 113443 2919306 ~ 2920007 (-) True c5h2orf69
XM_026939466.2 mRNA upstream 122958 2928821 ~ 2953801 (-) True nabp1a
XM_026932051.2 mRNA upstream 138411 2944274 ~ 2960366 (-) True cavin2a
TU90190 other downstream 753502 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 999242 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1128314 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1128702 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1140278 1662520 ~ 1662609 (-) True trnar-ucu_6
trnas-cga other upstream 133458 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1007616 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2034097 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 2525721 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 3517290 6323153 ~ 6324680 (-) False LOC117597343

Expression Profile