RNA id: XM_026946536.2


Basic Information

Item Value
RNA id XM_026946536.2
length 3327
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113546580
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10675383 ~ 10689789 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGGCGGTAGGTCTACTCAGGTGGGCTGAGGGAGTAGGTCTGCCGCCagacactatttttttttttcttttgtggtaTCGTTAGCCTTCAAACTACCGATGATAGGGCGAAAGTTTCTACATGTCACTTAGGAGTTCATTACCTTAActgtttaattttcattatatatgcatattgtataaagtgtatatatacagtatactactACTCATTTGTACTGAATAGGGCAACGTTTTCAATTTACTCACAAGCTGCTTCCACAAACTGGTTTTACCAGGTTGACTGATACGtTTCTTCAAGCTGTCCTTAGTGAGATTTGCTGATGGCTAACAGGCACTGTGTGTTGTGATCGTGGCACCCGGTAATGGATGGACACATACCCAGATTGGTGCTTATCTTTATTCTGTTGGTAATATCAggatttttactgtttattctCAACATATTTATGGAGAGCAGCATCCACTCATCCTTTAAACCTCCTGAAATCTTGTGGCCGCTGGAGGTAAACCACACTTACTGTGCACACTTTGGCCAGGAGCCCACGGCAGAAGAGGCCAAAGAAGAGAGAGATCTGCTCAATTCCATTGCATGGCCAGGTCCCTTGGTGCAAGGCCTGCCTGTGGAGCTCAGCAGTGACCCTGCCAAGAGCTACTTTGTGATTCAGGGCttgtcaaaacaaaacaaaggtgGTCAGCTTCTGGTCAATGTCCACGTGCAGAACTTCTTGGGCCTGCCTAAGGATCATGGTGGAGATTTCCTGATAGCCCGGCTGCATTCACCCGAGCTGGGTGCCGGTGTTGCAGGGAAGGTGCACGACTATAATGATGGCACCTATACAGTGTTGTTCCCACTGCTGTGGACTGGTGAAGCATGGGTGGAAATCACCATGGTGCACCCAAGTGAGGCAGTGGTGGTACTTAAGAGATTGCAGGAGGAGCAACCCGACAGAGTGTTTTTTAAGAGTCTGTTCCAATCTGGTGCTTTCTCAGAGACCACCGTGTGCAACCTGTGTCTGCCACTCAACGAGAAACCACTCTGCAACTACACTGACCCTTTAACTGGAGAGCCCTGGTACTGCTACAAGCCTGAAATGCTAGGCTGTGACACAcgaataaatcattataaaggGGGCTACAAGAAGAACCTCATTACGGAATATGAAGCACAGTTCTTCCAGAGtgatgtaaatatcaaaattcctATACCTGCATCAGCAATGGATAAAGTGACTGTATTACCTGCAGAAAGagGACAAACCAAAGtaaaaaatcattacatttcTACTGGCTACTACTTTCATGGTACCTGGAGGCCTTTGAATGGTGCAGTCATCCGGCGGTTTAATCACTCTTCAGCCATAACACATTGTCTTAGAGGGAAGGCTGTCTACATGTTTGGAGATTCCACCATGCGGCAATGGTTTGAGTACCTCACTAGCTCTCTTCCAAACCTCAAACTGTTAACCCTTTACAGTTCTAACAAAACAGGGCCATTCATGGCTCTGGACAGCAGGAACGATATTTTGATGAGCTACCGCTGCCATGGGCCGCCCATCCGCTTCAGCTCTGTGCTTTCCTCTGAGCTGCGCTATGTAGCTAATGAGCTAGACAAGATCCAGGGTGGGCCGGACACAGTCGTTCTTGTGAGTGTGTGGTCTCACTTTAGCACCTTCCCTGTTGAAATATATATACGGCGCCTACGGCACATCCGCAGGGCCGTGGTGCGGCTGCTGAACCGTGAGCCAGCTACATTGGTGGTGATCCGCACTGCCAACCTGCAGCAGCTTGACCCAGAGAGCAGCCTGTTCAACAGCGACTGGTTCTCTCTGCAGAGGGATGCTGTGCTGCGTGCCATGTTCAGAGGACTCCATGTGCAGCTGCTAGATGCCTGGGAGATGACGCTGGCCCACCACCTCCCACATGACATACACCCACCTCATGCCATTATCAAAAACATGATTGATGTGATCCTCTCCCATATTTGTCCAGTTAGGAAAATATAGAAGtatgaaaaaaatcttgtgaaaCTAATgtcaataaatgaatgtttcatCTACTTTTGAAAGTATTTTGGAGAATAAATACTTGTAACATTATACAGTTTAAGTTAAAACAAGTAATTTAAGCAAATGTTTGAAATTTGGTCCTGTGTTTAATAAGACTGTGTGATctgaatttattcatttctgactaatgaatttgcatttgtagAAAATAATGCGTACTGTTTTTTGGAATAGAGCGGTTTCTATTGATGCACCAGAATATGTTACGGGCTTCCTACTGACTTAGCATCTTCCTGGTTTATCAGCACCAAGCTTCCTACAACTCATTAGGGTAGTAATGCAAATGTGCAAGATTTGATGGGTAAATTTAATTGTTGCTTGGACAAAGATTCTCATTTTTATACCCTTTAATGTGGagaaaatggattattttggacgcattctccttctctctctctctctctctctctctctctctctttccctcaaagacataaaaacagaGAAGATTTTAAGACTGAGGACTGTGGAGATAGAAtgcatttatttagtttttttggtcactttccttaatttttttaaattgtcagaaaaacataaaaaaagattgTAACAATAAAATGCCTGCAAAATATGGTGATTTTACCATAGTCACAAACTTACAGACAACAGTTATCACAGCACATTAAAAGGTGTAATGCAACCATGTTAAGTATTCAAACTCTAAGTTCAGCGTATTACTGTACCTTGAGTATAAAGCACCCTAACTTTGAAGGATGCCCAACTGTTGCCTGGAACCTCTGTGGACTTGTAGGAAGGCCATAAACACATGCCGTTTTTCACCCAGGTCTCAGACAAATTGAGATTTGTGTGCTAAACTATAAAAACTAGGTGAGCAAGAGCACTTAGCAGTTCAAATAATTGTAGATAAAGATACAAATCTCTAAATGGTTTGGCCCCTACTTATCTCTGTGAGTTATTGACTGAGTATCAACCCACTAGATCCCTTCGGTCTTCCAACCAGGATCTGTTGTCTACCCCTAAGTCGAGGCTTAAGTGTAGGGGAGATCATGCTTTCTGTATTGCTGCCCCCAGGCTCTGGAACGCCTGCCACTATCCATTAGACAAGCTTCTTCTCTTAATATTTTTAAGTCCaggctaaagacatttttattttctaaagcgTATGGCTGATGGGATATTTGTATGATTTTataacttttctgtttgtttgttgtgtgtttttctgtttttgatgaCTTGCTGGAAAGCACATTGGTCAATGGAAGTTGTAATTaattgtgctatataaataaa

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578184.1 lncRNA downstream 53039 10621537 ~ 10622344 (-) True LOC117597353
TU94834 lncRNA downstream 897994 9775806 ~ 9777389 (-) True G79903
TU94864 lncRNA downstream 902106 9772634 ~ 9773277 (-) True G79933
XR_003402716.2 lncRNA downstream 908807 9764485 ~ 9766576 (-) True LOC113525888
TU94854 lncRNA downstream 917214 9757930 ~ 9758169 (-) True G79923
XR_003402728.2 lncRNA upstream 29345 10719134 ~ 10721674 (-) True LOC113526087
TU95462 lncRNA upstream 82599 10772388 ~ 10775221 (-) True G80463
TU95463 lncRNA upstream 86253 10776042 ~ 10776341 (-) True G80464
TU95531 lncRNA upstream 219384 10909173 ~ 10931379 (-) True G80526
TU95626 lncRNA upstream 279853 10969642 ~ 10971079 (-) False G80600
XM_034304399.1 mRNA downstream 29188 10635365 ~ 10646195 (-) False LOC113523755
XM_026909799.2 mRNA downstream 29628 10635365 ~ 10645755 (-) False LOC113523755
XM_026909792.2 mRNA downstream 29628 10635365 ~ 10645755 (-) True LOC113523755
XM_026909813.2 mRNA downstream 29918 10635365 ~ 10645465 (-) False LOC113523755
XM_026909807.2 mRNA downstream 29933 10635365 ~ 10645450 (-) False LOC113523755
XM_026912875.2 mRNA upstream 4072 10693861 ~ 10717168 (-) False LOC113526085
XM_026912878.2 mRNA upstream 4072 10693861 ~ 10717147 (-) False LOC113526085
XM_034304765.1 mRNA upstream 4072 10693861 ~ 10716027 (-) False LOC113526085
XM_026912876.2 mRNA upstream 4072 10693861 ~ 10716026 (-) False LOC113526085
XM_034304764.1 mRNA upstream 4072 10693861 ~ 10716026 (-) True LOC113526085
TU95376 other downstream 66341 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 1020928 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 1106263 9568555 ~ 9569120 (-) True G79826
TU94711 other downstream 1143715 9528862 ~ 9531668 (-) False LOC113525856
TU95628 other upstream 279628 10969417 ~ 10971157 (-) True G80600
TU95687 other upstream 328490 11018279 ~ 11035561 (-) True G80656
TU96948 other upstream 2023410 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 2023410 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 3862662 14552451 ~ 14553459 (-) False med14

Expression Profile