RNA id: XM_026946587.2


Basic Information

Item Value
RNA id XM_026946587.2
length 4158
RNA type mRNA
GC content 0.45
exon number 4
gene id kcnj3a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16429932 ~ 16457212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGCGCGGGGACGGAAATAGGCGGCACTAAGACCACGAAACTAAACGTTGTGACTTGGGAGCAAGGCAAGAATGGGAGCTTCGGAAACTTATTGTTATTGAGGGCGCAGGCAGCTCGTGGAGAGGACAGCGCGCTTCCTGCCTCACTCGCAATGACCAAAATGCGCATGAAGACACAGTCAAGACAAAGCCGATATCCCAGTCCCCAAGTGGCGACGCATTAAATCCGCAGGGCTGCTGCACAGTTCACCCGGAGTGGAAAGCCTGGCCAAGGCGCATCTGTTGAGGGAGCGCAACTCTGATGCACAACTTTGAGCATCCAGGACTGGATTAAAGCTCGTGTGGGATCTGACAGAGCAGATGAACGACGCGGTGATATCAAGGGCGAAACTGCGTCCAGCGCCTGGGGACAGCTGGTCATGCCTTTCTGCCTTCTTTCTTTTGAATCTgtcctgatttatttatttattttttttagtaaagagACATGCGTCGTGATCAGGCAGGTCTGAGTTCATGTTTAGTTACCTGTACGCGCTGTACTGACTGACATGCACTAACGACACCTGCGGAGGGAGACGATCCGTATGGTAACACACACGCTAGCATGTCTGCACTTCGGAAAAAATTTGGTGACGACTACCAGATAGTGACCACTTCATCCAGCGGCTCGGGCTTCGGCCAGGCCGCTCCGGAGCGGAAGCGGAAACGGCAGCGCTTCGTGGATAAGAACGGCCGCTGTAACGTCCAACACGGTAACCTGGGCGGAGAAACCAGTCGCTACCTGTCCGACTTGTTCACCACTCTAGTGGACCTGAAATGGCGCTGGAATCTGTTCATATTCATCCTGACCTACACGGTGGCGTGGCTCTTCATGGCCTCCATGTGGTGGCTGATCGCGTACGCGCGCGGAGACCTGAGCCGAGCGCACGACGACAAGTACACACCGTGTGTGGCCAACGTGTACAACTTCCCCTCAGCCTTCCTCTTCTTCATAGAGACCGAGGCCACTATCGGCTACGGCTACAGGTACATAACGGACAAGTGTCCCGAGGGCATCattctgttcctctttcagtCCATCCTCGGCTCCATCGTGGACGCATTTTTAATAGGCTGCATGTTCATTAAGATGTCCCAGCCCAAGAAAAGGGCCGAGACGCTGATGTTCAGCGAGCACGCAGCCATCTCCATGCGGGACGGAAAACTCACGCTCATGTTCAGGGTCGGAAACCTGCGCAACAGCCACATGGTCTCAGCGCAGATCCGCTGCAAACTGCTTAAAtctcgaCAGACCCCTGAAGGTGAGTTCCTCCCTCTAGATCAGCTGGAGCTAGATGTGGGTTTCAGCACTGGGGCAGATCAGCTCTTCTTGGTGTCTCCCCTCACCATTTGTCATGTGATTGACAGTAAAAGTCCCTTTTATGAGCTCTCCCAGCGCTCCATGCAGACCGAGCAGTTTGAAATTGTGGTGATCCTGGAAGGAATTGTGGAAACCACAGGCATGACTTGCCAAGCGAGGACGTCGTACACGGAAGATGAGGTGTTATGGGGCCATCGGTTCTTCCCTGTCATCTCTCTGGAGGAGGGATTCTTCAAGGTGGACTACTCTCAGTTCCATGCCACGTTTGAGGTCCCCACGCCACCCTACAGTGTAAAAGAGCAGGACGAGGCACTGCTCATGTCCTCGCCGCTCACAGCTCCATCGTTATGTAACAGTGGTGAGAAGAACAACTCTCTGGACTGTCTGGAGCTTTTGGAGGATGCAGAGACAACCACCAAGCTCCCAGCTAAGCTGCAGAAGATGACGGGACGTGACGGGCTGCCAAGGAAGCTGCTCCGAATGAGTTCCACTACATCAGAGATGACCTACAGCCTGGGAGACCTGTCCACAAAGCTGCAGCGCATCAGCTCCGTGCCAGGTGTCTCTGAAGAAAAGAATGTATCCAAGAGCTCCAAAATAAATGCAGAgcccatcagccaatcagtggCGGATTTGCCTCCCAAACTACAGCGATTGGCAGGGGGAGGGGGCGGAGGACGCATGGACGGACACTTGCCACCCAAATTACGAAAGATGAACTCGGACCGCTTCACGTAAATGACATAAGCAACCACTCACATGTACTATACTTCTCCCTTAGGCTTGCTAGCATGGACAGAATCTTACGCCTAGCATACCTATAAATGAGGACGActttaataaagcacatttGTGGAGATTTGTGGGTAGACATGCAGCGAGCAAATTCTTTCAGGTTGTGATTTTTAAGCACAATCTGGCATGTATGAAACACTAAGTGCATGTTAATGCAGTTTTTTGCTGTCAGGCATGTTTTATTTAGGCACGTTTATTTGAAGAGTGAATAAAATTTGCCAAGACAAGCTGGTGATCTGAACATCAAGCCATATGATTGGACAATTCCTCATACATGCctgatgtttattaattttatttgttcttttgttgtctAGTGTAAAAGTGTTTCTTAGATTATGTTAAAATGCATGTTTACTTGGAGAGGTAATGTACTCTAATGTTAGCCTTGAATATATTaccttctttcatttttctcagctTGTCCATAGTTGTTTTCAAGATTTTAAGAGACAGGGTAAGCTCCATACTTCTACAAAATGGGTTCAAGGGCAGTTCATCAAAACAATTTTATAGAAGGAAAATTATGTAAGCTAAGTGGATCTTAATGGTTTTTAGAACTATCAGCCctgcattaaagaaaaaaaaaaaatgaaattcccAAAGTCATTATAAATCCCTGAGCTCGTTTAGAGTCTGGATAAAAATCACTGCACTAGTATCAATGCATTATCCCCTCTGCCTAAATTAAGCAATAACTAAATGCTGTACAAACACTGACCTCCGTGTAGCTACTTTGAATAATATGTCTATTGTATTgacctctgagacacatgaacaTGGATAATTTGAGCTCCTGTACATTCCAGTACATGCCTTTTGTAGTAGACTGTTTGACAAGAACTATAATTAGTTTTTCAGCTTTACTTCagcttttaattcattttgacAGTTTACACATATTGTAGTCTAATTATAATGAGActgttgtataattatataaccAAATACCATCAAAAATGAAGATATGGTTCAATGTTTAATCTTTGAAATAAGCATCAACTCACATTTACTACCTAACCACAAAGTTAATTCCCTCTCTCACTGCTTGGTTGACTGGCAAGGTAGATTCATGCATGCAAGTGCCTGATCCGCTGAAGTGGTGTCTAAATCTTGTTAATGCACCCTGACTGAGCAGCGCTCTCTCCCCTGAGCCTCTGTCTTTATCACCATGGAGATCTCGGCACCTACTGCCATTTACTGTCCCACTATCAGCCTCACGGTGAGGAAATGATAGTGGAGATGGCCTTGTGTTATAGAATAGAAGCTTTTACTCTGCATCCAACAGAACACAGTGGCAATATCACCATGCACGACCTGTAGAAGGAAAGCTGCTATAGGTGGTGGATATCCCACTGTACCACTAACTGGGCTGCACCCTTTATTAGCATAAAGCACAAAGGTCTTGCTTTGTAACTTTATATgacttctgtctcactctctttgtgTTTGGTAAGTCACAATAATAAGAGGGAATGCACAATTATTTTCATACCTTTTTGCCTGTTAACCAGATCAATTTAAAATGGAACCAAGGCAATGGAACTAATCACCAAATGTCAGGACTGCATCTTGAGTCTTTTTTGTGATGCTAAAATGATGTGATAATCAAGAACATAAGTGTGGAAAATGCCTGTTATTTATTGAGGAAGTCAGTGTCACAGTTTCCTAGATTACCTCAGTTATTATGATATACATAAAATCTTAAGTCTCAGTTTATTTATGTCAAGtcttaaatatactgtataagacCCAATAAACCTTTCTACATATTTTGTTAGTAAAGTAAGCTTTCATGTGTTCTTTATATCATCCTAAATATACTGAGGGATAAGCATAAACCCTTAGGAATTGCATACATATGACGTAGTTGACCTTAGGATACACATATAGGCATATCCAATCTTTCCTGTGGTGCACTGTAAAATAGGCTAATGACAGCACACAAGCACGGCACAATAAACTCTGAAGTATTATACAATTAAGGTTATCTGGTATCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K04997 KCNJ3, KIR3.1; potassium inwardly-rectifying channel subfamily J member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99271 lncRNA downstream 20039 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 53646 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 201495 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 353312 16074499 ~ 16076620 (-) False lmo7a
TU99103 lncRNA downstream 356861 16072840 ~ 16073071 (-) True G83474
TU99680 lncRNA upstream 508299 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 670098 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 850357 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 866833 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 875280 17332492 ~ 17346350 (-) True G84189
XM_034304896.1 mRNA downstream 23454 16370227 ~ 16406478 (-) False si:dkey-91i10.2
XM_026913177.2 mRNA downstream 38045 16370227 ~ 16391887 (-) True si:dkey-91i10.2
XM_026912694.2 mRNA downstream 67028 16353143 ~ 16362904 (-) True arl5a
XM_026911470.2 mRNA downstream 80690 16293892 ~ 16349242 (-) False neb
XM_026912793.2 mRNA upstream 14847 16472059 ~ 16516287 (-) True galnt13
XM_026910878.2 mRNA upstream 105462 16562674 ~ 16614183 (-) False fmnl2a
XM_026910888.2 mRNA upstream 105462 16562674 ~ 16614183 (-) True fmnl2a
XM_026910895.2 mRNA upstream 107058 16564270 ~ 16614183 (-) False fmnl2a
XM_026911738.2 mRNA upstream 160359 16617571 ~ 16675267 (-) False mylka
TU99188 other downstream 209066 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1352737 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1592539 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1876473 14552451 ~ 14553459 (-) False med14
TU96950 other downstream 3713263 12713199 ~ 12716669 (-) False hspbap1
TU99754 other upstream 571095 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3023908 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3111539 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3769516 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4678834 21136046 ~ 21144621 (-) False phgdh

Expression Profile