RNA id: XM_026947062.2


Basic Information

Item Value
RNA id XM_026947062.2
length 3029
RNA type mRNA
GC content 0.45
exon number 5
gene id csrnp3
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18468952 ~ 18497409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCAGGGTTTAGCTGTCTGTGGCTTAATGATCAGGTGTGGCTCAGAAGCAGTCATGAGTGGAATACTGAAGAGGAAGTTTGAGGAGGTGGAGGGAGCGTCACCGTGCTCCTCACTGAGGGAATCGGAAGAGGAGGAGATATCGAGCAGTGAGAGTGGAGACAGCAGCGACAGCGTCAACCCCTCTGCCTCTCACTTCACACcctcctccatcctgaagcgAGAGAAGCGGATGAGAACTCAGAGGGTGCATTTTGAGAAGGTGACGGTGTATTATTTCAGCCGGCGACAAGGCTTTACCAGCGTGCCCAGTCAGGGAGGCAGCACCTTGGGCATGTCGAGTCGACACAGCTCTGTACGGCAGTACACACTCGGCGAGTTTGCCAAGGAGCAGGAGCGCCTACACAGGGACATGCTGAGAGACCACTTGAAAGAGGAAAAACTCAACTCCATCAAACTCAGGCTGACTAAAAATGGTTCTGTCGAGTCAGAAGAGGCAAATGCTCTCACGGTGGACGATATCTCAGATGATGACCTGGACCTGGACAACACAGAGGTGGATGAGTACTTCTTCCTCCAGCCGTTGACCACCAAGAAGCGCCGGGCCCTGCTTCGCGCATCTGGTGTCAAGAAGATCGATGTGGAAGAGAAGCATGAGCTGAGGGCCATCCGAGTGTCACGGGAGGACTGCGGCTGTGACTGCAGACTCTTCTGTGACCCAGAGACTTGCACTTGCAGCCTGGCAGGCATCAAGTGCCAGGTGGACCGCATGTCGTTCCCATGTGGCTGCACTAAAGAGGGCTGCAGTAATGCTGCCGGCCGGATTGAGTTCAACCCCATCCGGGTGCGCACGCACTTCCTGCACACCATCATGAAACTAGAGCTGGAGAAGAGCAGGGAGCAGCAACAGAGCTCGGCCCCTGGTCCCGCCTCTGTCCCTGCCCCTAATGGCAACGGTTACCACAGCGACACCAATGGACACTGCAGCCCACTAACATCAGGCCAACACGCTTTAGAATATCCTGTCCCTGATTCCGTCCAGCAGAGCGCCATCATGCACCTGCAAGCTGTAGATGATATGGATGACGCcttggaagaggaagaggatgaagaggaggaggaggaggaggaagaagaagatgaggatgaggatgaaaatgaagaGGATGAAGACGAGAGCAGCAGTTTGTGTAGCCTGTCGGATTCGAGTACACAGAGCCTGGCGAACAGTGActcagaggaggaggaagacgaTGATGTCGATGATGATGAAGACAAAGCAGAGGAGTTTGAGGATGGCCTGACCATCGCTCCTTTGTCACACAATGAGGTGGTTTCTCCATCCTCTGTGATGTGCTACTCGGAGAATACGGTCACACAGGAGAACCAAACCAATGGCAATGCTTATTTTATCAACTCCTCAGCTGAATACTATCAGATGGAGAATGCCAGCTCAGCATCACTTTTAGCAGCTGCTAACCAGGCTAACGAGAGCTATGGAGGAGATTCAACCTCATATCAAGAAAGGGTGACCAGCACTAATGGAGTGATGGCACCAGGAGCCTTTAACATGACCACTGAGCATTACACTGACTATTCACAGCCACCTGAGGAACAATACACCAATCATCATTTCACTCTCACTAATGGATCCTCAGCCACAATTGGCTGCTGTGAACCAGAACAGGACAAAAGCATGCAATCGAAAGGGACCTAccacagccaatcaggagagcTGAGTCAGATGGAGTACCAAAACTATCTGAACAATAACACAGAAGAGGGATACACGACTAATGGGAACTGTTTTGTGGTAGAGCAGCCAAAGGAGGCATCTCACAGCCTGTCTGAGGTTACCTCTTTAGCAGACACCACCAAAGGACCCCCAATACTGGAGCCTTTCCCTGAGCCCACCCCTGTTTagatacacacattacatcCATGAGGAGGAGACACAAATGGTAAGCTATCAAGTGTTTGATTCAAATACCACACAGACTCAAATAATGGTCTTTGTTTCTACACTTGACATAGTTTAGTTTGAAGACGTTGACATGTATGATATTCATAATCATGTATTTTTCAAtgagccagaaaaaaaaatccataattcTAAGTGCAAACTGAGATCATATAAACTGTAAGCTTTAGGCCTGTGCAATGTTATCTGGTATTTCAAAAGTCAAAGTTCTAGTTTTGAGCAGATATTGTGGATAGAACTTTTCTATGTCTATGTGTCAGTGGTGCAAAAATTGTTGCCGTTCATTAATATATTCAAGAAAATGTGTATACTTAATCATTTTGATAAAAGCGCATGTTCTTTTGTAGCTTTTGTTGGCAATCTATGGTTTTTGTATTGATTGCATTgatgtactgtaaaaaaaaaaaaaaaaggttaagtTCTTGTTGTTACATATGTATATCATGCTTTTAAAGCATTTGTAAAAGCATGAAGCCTGATCTTAAAATGTTTGCTGTTTTTGCAATACCAAATCAGATGATTTAAGTTGTGAATATAATACACTTCATGAAGACAATGCACTTTTCCAGAGGCTGATGCCATGCAAAACGGCAAATAGTCTTTAGCAGAGCACTGATAAGGTGAATTATCTCTTACTGGACCATTATTTAATCCTCATTACACCATTCAGGtggtgagagaatgaaagagttCTTCATTTTTAGCATTTCCAACTAATATCTTTGGGATTATACAGGGACATCTGATCAAATGCACTTTGAAAAGCATCAAATTAATTTGTTCTGAGGCATTGcatatcttttaaaatgtagttaTGTGTTCAAGTTATTGAAAAAAAGGCTataggaaaaaaggaaggaaagaaagcatATGTCTGAAAGTAAATTGTAGaaagtttattaaattaatcaTAATGTGGAGAACCAGAAATCTAGTGATAAAATAGGTCTGATTTCTCATAAGTTATAATAAGGCTTGTGTTTCAGCATATGCTTATTTCCCAATTTAATGTGTTACTtagtactgtaaaaaaaaaaaaaaaaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100817 lncRNA downstream 331869 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 333338 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 335263 18133402 ~ 18133689 (-) True G84880
TU100815 lncRNA downstream 336954 18131410 ~ 18131998 (-) True G84881
TU100258 lncRNA downstream 635363 17833375 ~ 17833589 (-) True G84411
TU100942 lncRNA upstream 59306 18540353 ~ 18555865 (-) True G84975
TU101041 lncRNA upstream 186944 18667991 ~ 18668211 (-) True G85069
TU101156 lncRNA upstream 432340 18913387 ~ 18915283 (-) False LOC113526313
TU101194 lncRNA upstream 557180 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 570351 19051398 ~ 19053050 (-) True G85211
XM_034304773.1 mRNA downstream 89589 18373177 ~ 18379363 (-) False slc38a11
XM_026913030.2 mRNA downstream 89589 18373177 ~ 18379363 (-) True slc38a11
XM_034304772.1 mRNA downstream 89610 18373177 ~ 18379342 (-) False slc38a11
XM_026912978.2 mRNA downstream 98491 18344850 ~ 18370461 (-) False mbnl2
XM_034304810.1 mRNA upstream 189004 18670051 ~ 18703548 (-) True stk39
XM_026913146.2 mRNA upstream 189004 18670051 ~ 18703545 (-) False stk39
XM_026909981.2 mRNA upstream 270867 18751914 ~ 18756220 (-) False spc25
XM_026909992.2 mRNA upstream 270867 18751914 ~ 18756142 (-) True spc25
XM_034304900.1 mRNA upstream 270867 18751914 ~ 18755996 (-) False spc25
TU99754 other downstream 1429109 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 2248086 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3391757 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3631559 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3915493 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1000073 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1087704 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 1745681 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2654999 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2654999 21136046 ~ 21144621 (-) True phgdh

Expression Profile