RNA id: XM_026947885.2


Basic Information

Item Value
RNA id XM_026947885.2
length 1585
RNA type mRNA
GC content 0.41
exon number 9
gene id uchl3
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16079562 ~ 16085068 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAATAAGTTGAAACCGGAAGCTTATCGTTTTTTGGTAGCATTCGCTTTACTACCATCCATATGATTACCTGTtagccattaaaaaaatctgacgCTTGGACTAAATATATCCTCGTTACATATCGAGGGGGAACTGTACTACTCTGTCGCTAAAATCAGTACCTGGGACTTTAGTTGAAATGGAAGGACAACGCTGGTTACCCCTGGAGGCTAATCCTGAAGTCATGAACCAATTTTTACGACAGTTGGGCTTAGTACCTAGCTGGCAGTTTGGAGATGTATATAGTTTGGACTCAGAGCTTCTTACGATGGTGCCAAGGCCTGTGTGTGCTGTCCTGCTCCTCTTCCCTGTCACGGAAAAGtacgAGTCATTTAGACTGGAGGAGGAAGCAAAGATTAAGGCACAGGGACAGGAAGTGTCATCAGAGGTGTACTTCATGAAACAAACTATCGGAAATGCATGTGGGACAATAGGGTTGATTCATGCAGTAGCAAATAACCAAACACATCTTGAGTTTGAGGCTGACTCACCACTGAAGGTGTTTATTATGCAGTCCTCTAAGATGAGCCCGGAGGAGAAAGCAGCCTTCCTAGAAAAAGATGAGAGTATCCGTGTAACACATGAGTCAAGTGCTCaggagggacagacagagGCTCCCAGTGTCGATGAAAAGGtggatttacattttattgccTTTGTGAATGTTGGAGGGCATTTATATGAGTTGGATGGCCGGAAACCTTTTCCAATAGTTCATGGGAAAACCACAGAGGACAGCTTCCTTGAGGATGCTGCAGAGGTCTGTAAGAAATTCATGGCTCGTGATCCCCAAGAGCTCCGCTTCACTGTTGTGGCTCTCTCCAAAGCATAAAACACTCGCCTACTTTCTGTTTACTCAAGAAGAAACTGCCAGCCATTCGCAAATGTTAGAATGTTTGCATTCTTACACAGtggattacaaaaaaaatggttatttGCTAATATTTTGCTGCAAATTTCTTTGACCTGAGGTGTcattaataatgaaacaaaagaaattgAATGTGTCCATGTACGCATTTAtaggctttttttaaattatgttcaaTTACTACTTGAATTATAACTATGCCTTTTCTGCTCTGTCCTGCATACTGACACCTAATTTAAATTAGACCAGAATTAAGTGGTGGTTTCTCTAAACACTGCAAAAGAACGAATCCTGTGTGTAAAACATGCTCCAGACAGATTCTCTTTTCATGAtgcataaaattacattaaaggtTAAGCTCTTTGTAAATGTTGACTTGTAATGATTTGTCAGATCAACATTTTCCCGATGTTGGTGTTTGCTTTTGTTAAACATTAGAAAAGCATTGCCTGGACATCTTTACAGTcttaaactgtccagtttctgtgagccaGTGCCCATGGGATCAAATTTTgaagtgttgtgcattctgagatacttttctgttcATCATGGATGTGAAGAGTGGTAGTTTGAGTttctgtagccttcctgtcagttccAACCTGTCTGGCCATTCCcctgtgactctctctctctctctctcaacaagAAAGTATTTCCACCCACAAAA

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K05609 UCHL3, YUH1; ubiquitin carboxyl-terminal hydrolase L3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99098 lncRNA downstream 2942 16074499 ~ 16076620 (-) False lmo7a
TU99103 lncRNA downstream 6491 16072840 ~ 16073071 (-) True G83474
TU99102 lncRNA downstream 6878 16072397 ~ 16072684 (-) True G83473
TU99082 lncRNA downstream 48819 16030534 ~ 16030743 (-) True G83457
TU99081 lncRNA downstream 53373 16025382 ~ 16026189 (-) True G83456
XR_004578163.1 lncRNA upstream 139278 16224341 ~ 16228437 (-) True LOC117597324
TU99247 lncRNA upstream 289522 16374585 ~ 16376286 (-) False si:dkey-91i10.2
TU99271 lncRNA upstream 324365 16409428 ~ 16409893 (-) True G83614
TU99680 lncRNA upstream 880448 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 1042247 17127310 ~ 17128680 (-) True G84061
XM_034304336.1 mRNA downstream 3173 16043283 ~ 16076389 (-) False lmo7a
XM_034304342.1 mRNA downstream 3350 16043283 ~ 16076212 (-) False lmo7a
XM_034304341.1 mRNA downstream 3350 16043283 ~ 16076212 (-) False lmo7a
XM_026912759.2 mRNA downstream 3353 16043283 ~ 16076209 (-) False lmo7a
XM_034304340.1 mRNA downstream 3353 16043283 ~ 16076209 (-) False lmo7a
XM_026912661.1 mRNA upstream 13690 16098753 ~ 16099552 (-) True LOC113525961
XM_026912662.1 mRNA upstream 13690 16098753 ~ 16099552 (-) False LOC113525961
XM_026911595.2 mRNA upstream 208829 16293892 ~ 16349242 (-) False neb
XM_026911579.2 mRNA upstream 208829 16293892 ~ 16349242 (-) False neb
XM_026911566.2 mRNA upstream 208829 16293892 ~ 16349242 (-) False neb
TU98290 other downstream 1002367 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1242169 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1526103 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3351537 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 134901 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 943244 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3396057 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3483688 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4141665 20226728 ~ 20237615 (-) True G85848

Expression Profile