RNA id: XM_026948057.2


Basic Information

Item Value
RNA id XM_026948057.2
length 7269
RNA type mRNA
GC content 0.47
exon number 20
gene id tbc1d4
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10452997 ~ 10483869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGTGTGATTTGGGACATGGCCGTGTGGAGGGGTACCGCCCCCTGTCAGAGCCACGCCTGCTGGAGCTGCAGCCTGGCAGAGGAGGACgacgctgctgctgctgctgctgtcaaTAGCAGCGAAAAAACCCCACGACGCCCAAAACACTAAAGAATAACAAACTAAAGTAGTGACTACAGAGGAGAGTGAGTGTCTGTACTGCAGTATACGAGTTGTCAGCgcggtgtgtgtgagctgtagGTGTGTAACAGgagcagaaggaggaggaggctcCACAGTGTCTGCGCTGTGTTGTGTTTACACACGCCTCACTTCAGCCGCCACGTTTCAGTGCGCTAACTCAACTGTCTCCTTCAGCTCACACTGCAGCTCTTCTCGCAATGGACGCGTGAAAATCATTCGAGGTGTGCGGAGAAAACCAGAAACGACTTGCTTGTTTAAGGAAAAGTGCAACTCGTTTGTTCCAGCTCCATGCGGGACGCCTGCTCTGGCCGTCTTCTAACAGTGTGTGCACACTTCCGAGCAGAAAGCTGTTCAAGAGCAGCCGAACAGGACGAGagaaaaaaaccacacacacacagatacacagacacacactccatgTGATTTGTTGCACAGCCGAGATCCAGCTGTAGTTTGGAATTTGTTTTTTGTCCTCTTTGTCGAGTTGAGAAGTGGAGATGGAGGGCGCGGAGGAcaaagggagagggagagggaaggagaggagcTTCTCGCTGTGGTATGTGGGCTGCAGCGCGCTGGACCGGCGCACCACGCTGCCCATGCTGCCGTGGCTGGTGGCAGAAATCCGCAGGAAGAGCGAGTCCGGTCCGGTTCAGGCTCGGCTGGTCCAGCTCTCTCTCACCCCCCCAGTAATCCGCTGCGTGCCtgccaacagcagcagctcgtCCGTCTTTATATTTGAGCACAAAGCGCAGTGCATCTCGCGCTTCGTCCACAACAGCCATGACCTCGCCTACTTCGCCTACCTCATCCGCAGCCAGCCGGACGACCCCGAGTGCGAAATGGCCTGCCATGTGTTCAAGGCGTGCGACCCAGACCAGGTGTCTGAGGTCATCAGCAGCATCCGGCAGGCCTCCAAAAGCGCACTCAAAGAGGAAAACAAACCCAGGCAGGAGGCTGAGGAGTCCTTTTACAACTCACAAAAGTTTGAAGTGCTTTACTGTGGCAAGGTGACAGTGAACCACAAAAAAGCACCGTCCACCCTGATTGACGACTGCATCGACCTGTTTCGGCAGCACGAGTCAGAGCGCAGGCGTCTGCGCCTGCTGAATGGCCAGCGCTCTATTGAGACCCCGGTGGTGTTCACCGTGGGAGACGACCCACTCAGTGCATCGCTCTCTGAAGCTTCACTCACAGAGATAAATGAGAAAGCAGGCGGTACGCGCAGTGCCTTCCCCGAGTGCATCCAGGAGGACTCAGGCTTTGAGCAGCAGGAGTTCCGCACTCGCTGCAACAGCTTGGCAGGTGGCTTACAGAAGACTCCTAGAGAAACGGGAGCCAAAGTGCCAACACGTAGGAGACATGCCAGCGCACCTAACAATGTTCAGCCCTCTGATGCAGACAAGAATCGCACCATGTTGTTTCAGGTGGGGCGGTTCGAGGTGAATATCATCAGCCCTGACAGCAAGACAGTAGTGCTGGAGAAGAATTTCAAAGATATCTCGTTTTGCTCCCAGggagtgAAGCAGACAGACCACTTTGGGTTCATCTGTCGTGATGTGCTGGAGTCAGGACCCAACCAGTACATATGCTACGTGTTCCAGTGTGCCAGTGAGTCTCTGGTGGATGAGGTGATGCTGACTCTGAAGCAGGCCTTCAGTACAGCCGCGGCACTGCAGAGCTCCAAAACCCAGATCAAGCTATGTGAGGCCTGTCCAATGCATGACCTGCACAAGCTTTGTGAGCGAATCGAAGGGCTGTACCCTCCCAGAGCGAAGCTGGCCATTCAGAAATACCTCTCCCTGCTGAGCGATAATGAGCAGGCAGACATTTTTGAACGTGTACAGAAGATGAAGCCAAGTTGTGATCAGGAGGAGAACGAGCTGGTCATTCTTCACCTCAGGCAGCTGTGTGAGACCAAGCAGAAGACACATGTACATATTGGAGAGGCTCCTCAGAATGCAGTAGGATCAGAGGGATCAAGTGTAGCTGGACGCAACAAGCTGGACGTGCTGAAAAATAAGGCACGCAGCTCCCTGACCAGCTCCCTGGAGAACATCTTTTCacgggGTGCAAACCGGATGCGCATGCGTCTAGGAAGCATGAGCAGCTTTGACCGACAAGACGAGTCTCCTGGTGATTCTCCTCCAGGGACTCCCCCTGCTACCTTGGAAGAGGACCCTGACGCCCCTCCGTTCCGCCGCCGAGCACACACCTTTAGCCACCCTCCAATCAAGAAGAGGATCTCTTTCACAGAGTTGCCGACACAGAACAAGGTTCCTTTGCACAGACAACAGTCTCTTGCACCAGAGCTGCTGCAGAGCAGtaatGGAGAGGACAGAAGCAGGAGGCTGTCTGGCTGCAGCACTGACTCGGTGACTGCAGTGACTACACGCAGAGTGTCGTGGCGTCAGAAGATTTTCCTGAGGGTGGCTTCACCCATGAACAAAGCCTCAGCCTCTATGCACAAGGCTGATATGGATGGCAGTGAGCTGTTGCCGCTTTCTCCCCGTGCCTTACAACAGGAGCAGAACCCCCTATCTGGGCTGCTCTCCTCCACTCAGAGCCTGAGAGGAGAGAACGGACGCCGCATCACTGCTGATTATAGGGCTCTGTGGAAGAAGGCCATCCACCAACAGATTCTCCTTATCCGCATGGAGAAGGAGAACCAGCGCTTGGAGGAAGCAAGCCGAGATGAGCTACACATCCGTAAGATGAAGCTGGACTACCAGGAGGTGGGGGAGTGTCCTACAGAGGTGCAAGCTCTCTGGGAGAAAAAGCTAAATGTGCCTTGCAGGACCAAAGTGCAGTGGGACAAAGACGAGATCCACACTGCTCTCTGCCAGGgtGTCCCAAAATGTCGGCGAGGTGAGGTGTGGCTCCTCCTCTCTCAGCAGTATCGCCTGCGTCATCATCTACCTCAGCGGCAGCAGCCTCCTGATACGCCCTACCAGGATCTGCTCAAGCAGCTCACCACACAGCAGCATGCCATCCTGGTGGACCTGGGTCGCACATTCCCCACGCATCAGTACTTCAGTGCACAGCTGGGCGCAGGCCAACTGTCTCTTTATAACCTGCTGAAGGCCTACTCTCTACTGGACACTGAGGTGGGCTACTGCCAGGGCATCAGCTTTGTGGCTGGAGTGCTGCTGCTGCACATGAGCGAGGAGCAGGCCTTCGACACGCTAAAGTTTCTAATGTACGATCTGGGGCTCCGGCGTCAATACCGGCCTGACATGATCTCCCTGCAGATTCAGATGTACCAGTTGTCCCGGCTACTGCATGACTACCACCGTGGTCTGTATTCACACCTGGAGGAGCATGAGATCAGCCCCAGCCTGTATGCTGCTCCTTGGTTCCTCACACTCTTCGCCTCTCAGTTCCCCCTCGGCTTCGTCTCCCGCATCTTCGACCTGCTATTTGTCCAGGGCACAGAGGTGATTTTTAAAGTGGCCCTGTGTTTGCTGAGCAGCCATGAAGGAGAGATACTGGAGTGTGACAGTTTTGAGAGCATTGTAGACTACCTTAAGACCACCATACCTGCCCTCACACAGAGCCAGATGGAAGAGACAATCACCAAGGCTTTAGAGATGGACATCTCCAAGCAACTGCACGCCTATGAGGTGGAGTACCACGTCCTACAGGACGAGATGGTGGACGCCGCTCCACTTTCAGAGGAGTCAGACAGGCTGGACAAACTGGAGAAGACCAATGCCCAGCTCAAAAAGCAAAATATGGATCTGCTAGAGAAACTGCAGgcaGCACGGGGGAAAATCCAGAGTCTAGAGAACAGTGTAGAGAGCTTCCTGGCACGTGAAAGCCAGATGAAGCACATGATCCGCTCGCTGGAGCAGGAGAAGGCCAACTACCAGAAGACCATTGAGCGCATGCGCAGCAGCCTCCCTGCAGACGCAGCTGACGTGGAGATGACCCAGCTGAAGATGAGcagcaacagcaaaaccaaagcAGCCAACAAATAACCCTGGGTTAGCAGGCATGTCCTGACTGAACATATAGAACATGCACCTTACATCCATGCATAGTGGAGTACTGAGGGGGTGTGGAATTTTCCCTTGGTAGTCCCTAGCAAAGCTTTTAAGGGGCTGTTGAACTTTAGGCAAATGTCAAACTGACCATGACTAAGATAAAGGGTTGATTCTGGGGAGGGAGTGTAACAAATGTTAAGCTTTCTGCAAAATAGGCCTTGCTTTTAGCATCCATTTTCTCTGTACTTCCACGCCTACACAAAATGCCCCAAAAGTCCTGTCAGACTTGCTTTACTCCACTGTACTAAATTCACTTCAGGTTTAGGGATCATGGCTGCTGCATAGAACAGAAACTTTGTTTCAGTGTCAGCTGTGTTGAAAACACTTGAAAACAAGATGAATGTAGTTTTTTTCCCAAAGTGCAGTGTGACTCATGGCTGTGTAAGGAGGATCGCTGCCTTGATGTCAGCGTATGCTTTGAGAATGGCAGGCAGTGTGATTTTGAGCTTGCTGGAGAACTTTTACTGACGGAACACAACAAAAGCGGCAGTGACGCCATCGAACGCCAAAAACCAAAATATTTAGCTTATCAGATCGACACTCTGCTCAAAGAGCTTAACCCAAAGTTCAAGCAGGAAATGAAACTCTCTTTGAATTTCCTCTGACTTTGCAGCACCGTCCAAATTTAACCTACTCTCCAAACTCCTACACCTCTCTGGCAGTTCATCAGTTACTGAATGTGCTTCAAGGCAAATCAGGCCTGCTGAAGACAGGAAGAGCCTACCACACCGTCTACCACAATGCTGCAATGTATGTTCATGAGTTATGCAAGCTACACAGTGAAAAGTTTGTTTGCACAGGGCATTTAATGTCTAAAAGTATTCCATGAAGTTGTACAAATTTTTCAGGGCTatgaaaattctgaaaaaaaaaaaaaatttaaaaacaaaaccccCTCAAAAACCTataatccaccatttttttttttttttttttacgtgaaCAATCTTTGTGTTGTGTCATGTACTACAAACTCATTTGTAAAACGGTATCTGGAATTTGCGCAAATATGAAGCATATGTGCgggatactttttttttatgttcactcTCCTCTTGAGTAGTTTCTAGAAAGCCTTCCATGAGACATAGCGTATTAATGAaatttgaatgaatgttttatgtATCACACGTTTTTAATGAATGCTCAATAACTTGCAGCTATGCAAAATGTTGTTGCACCtgaatagaaaaaaattctcttttttCTATTGAAGAAGTGATTTGGTATGCGGTCTGTCGCAGGAAAGGATCCTCCGCCAGTAAAGAGctgctatttcacatagcatgAATtgagtaaatgtgtgtaaagctTCTCATTACCTATGCCTTAAAGGATGGGATAAGTAGCGTTCCATGATTAAAATTTCATACCATTTTAAGAGTAAtgaatattacttatattaaatattgagaGTGATGCATTGATTTAGATGTTGGAATTTGAGCTGGTAAATTTCTGCAGTGGCTGGCTGAAGCATTGTGCAgcttttttacagattttttttaatatgctttATTGGACGTGTAATCTGCAGAGAACCTGTGctagtaaacaaaatgtaaaaaagaatccaaaaaataatacacagtaCTCTATTCACTATAGCTCTTAATATGAACTTACTAATACAGACTTACAGTCATCTATTCTCAGTTGCAGAACAATAAGCAAAAGCTATCCAGGCTGTGTGCCAGATACTACGCTCTActttttgaaaacttttttccTTCTGGTCATCTCTCAAAGGGTGACTTACTCCTACTCTTGTTTccagaaagctgaaattctgcagGGGTTTTACTGATGATTGCTGTTCTGATAGTagttctgttttatttgctttCCTGCATTTATCAAGTCATTTATCAATGCAAAGCTGTCTTAGGCTTTCGAAACTCTCAGGATCTACACAtctagcaatttttttttttttgccttcatatgtttttgtttggtCTTAAAGTGGTGTGCTAGGCCACCAGTGACATTTTGACAAGGTTTCATTTCTGCGTCAAATGCAGACagacactgtaggtgttaagtGGGTTATATTGGTCTGATAATTGTGTGCGGCTAAAGGCCAAAAAACAgctctgttttgttgtttggaAGCTTGGAACAGGAGTTGCTTCTTACGATGGTGTGAAATCAGCTCCATGTGTACGTAAGCTCTCAGGTCAGTTTATAAAAACTGTTTTGACATGTACGTCACCGTGGTGGCAGAAGATCTTGAGAGATGCACCAATAAAGATAATTTACTTAACAGCATTTGGTGAAATTAAGAAAACACTGATAGCAAATTATTCCAACGAAGAAGCATCTTGTTGCATCTTTGTCCTGGAATCCCCCTGGTCTCCTTGGCTGCGGTTCTAAACAGCTGCTAAGAAATTCTGTGTCGCTACATTGAGACCCATTTTGTGTTCAAAAGTgtattatcatatttatttgtgtattctCCAAATGAAGCACATTTTCCAAAATGTCAATTGTCCATTAATCAAAGGATTTGACTGTCGTCATTGAACCTACAGTAAACACGAGTACTGCTTGTGTTAGACACACCACACCAACACTGATATGGGTGTGGTACATAACTGCTATGTTGGTTTTTAGCCAGTTCACACATTTCTGCTCTTTTAAGAAGTGAAATATGCAAAGTTATATGGCATGTGACGTGTGTTTGCAGGAAAAATCTGCATAAATCTGATGTTAAACAGATCACTAAATCTATGAAGGTGCACATGACaaaatgtctgttttctttttctttttaaagaagatGCCAGAATGCAATCTTTGTCTTTCATTAAACTTGACACCAGGttacattttgaatatttttccaCCATGTCCATGCTTGGGGAGTTGCAGTGTGTCAATGTCAATCATCAATGTTTAATGATTGTTGCTCTGTAAATACAAttgaataatgcaaaaaaaataaaaaaaaaatctgtggacTCTGTGGTCCACTTGTTGTATGTTAATCAAGAGCCGATGCCTTATTAAAACATTCTTCACTGGCTTTTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94834 lncRNA downstream 675608 9775806 ~ 9777389 (-) True G79903
TU94864 lncRNA downstream 679720 9772634 ~ 9773277 (-) True G79933
XR_003402716.2 lncRNA downstream 686421 9764485 ~ 9766576 (-) True LOC113525888
TU94854 lncRNA downstream 694828 9757930 ~ 9758169 (-) True G79923
TU94851 lncRNA downstream 697032 9755741 ~ 9755965 (-) True G79920
XR_004578184.1 lncRNA upstream 137668 10621537 ~ 10622344 (-) True LOC117597353
XR_003402728.2 lncRNA upstream 235265 10719134 ~ 10721674 (-) True LOC113526087
TU95462 lncRNA upstream 288519 10772388 ~ 10775221 (-) True G80463
TU95463 lncRNA upstream 292173 10776042 ~ 10776341 (-) True G80464
TU95531 lncRNA upstream 425304 10909173 ~ 10931379 (-) True G80526
XM_026912743.2 mRNA downstream 27834 10387369 ~ 10425163 (-) True klf12b
XM_026912742.2 mRNA downstream 27837 10387369 ~ 10425160 (-) False klf12b
XM_026912437.2 mRNA downstream 114497 10230762 ~ 10338500 (-) False dachd
XM_026912436.2 mRNA downstream 114497 10230762 ~ 10338500 (-) True dachd
XM_026912346.2 mRNA downstream 288700 10097231 ~ 10164297 (-) True clybl
XM_026912739.2 mRNA upstream 8061 10491930 ~ 10495773 (-) True commd6
XM_026913031.2 mRNA upstream 18086 10501955 ~ 10505784 (-) True lamp1b
XM_026912017.2 mRNA upstream 33338 10517207 ~ 10538871 (-) False pou2f1b
XM_026912088.2 mRNA upstream 33338 10517207 ~ 10538806 (-) False pou2f1b
XM_026912080.2 mRNA upstream 33338 10517207 ~ 10538806 (-) False pou2f1b
TU94731 other downstream 798542 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 883877 9568555 ~ 9569120 (-) True G79826
TU94713 other downstream 921329 9528304 ~ 9531668 (-) False LOC113525856
TU95376 other upstream 124444 10608313 ~ 10609042 (-) False LOC113526229
TU95628 other upstream 485548 10969417 ~ 10971157 (-) True G80600
TU95687 other upstream 534410 11018279 ~ 11035561 (-) True G80656
TU96948 other upstream 2229330 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 2229330 12713199 ~ 12716669 (-) False hspbap1

Expression Profile