RNA id: XM_034304363.1


Basic Information

Item Value
RNA id XM_034304363.1
length 5553
RNA type mRNA
GC content 0.43
exon number 30
gene id myo1b
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15155587 ~ 15212864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacaggacacatcACAGTGTCTTTACCGGGAGCGAGCAGAGCTGCTGGACTGGAGACTGACGCGTCCCGGCTCTGAAAGGGACAAAACAACACCGACAACAACGGAGAAGCATCGAGGAAGCTCCGTTTCACCTTTAGAAAGACGGCTGGATGTTACATTTCCCTCCAGCAGTGGATTAAAGGGAATTTCATTCTGAACACGAGGGGGGAGAATGTCCAAAATGGAGGTAAAGACATCACTTCTTGACAACATGATAGGGGTGGGCGACATGGTCCTGCTTGAGCCGCTGTCAGAGGAAACCTTCATCAGGAACCTACAGAAGCGCTTTGAGCACAATGAGATCTATACATATATTGGTAGTGTGGTGATTTCTATGAACCCCTACAAGTCCCTGCCAATCTACTCAGCAGACAAGGTGGAAGAGTACCGCAACAGGAACTTCTATGAGCTCAGCCCTCACATTTATGCTTTGGCAGATGAAGCATATCGGTCTCTTCGGGATCAAGATAAGGACCAGTGCATCCTCATTACTGGAGAAAGTGGTGCAGGAAAGACCGAGGCCAGCAAGCTGGTGATGTCATATGTGGCTGCGGTGTGTGGGAAGGGCCAGGAGGTGAACAAGGTGAAAGAGCAGCTGCTGCAATCCAATCCCGTACTAGAGGCTTTTGGGAATGCCAAAACTGTGAGGAATGACAACTCCTCTCGATTCGGCAAGTACATGGACATCGAGTTTGACTTCAAAGGGGATCCACTGGGAGGCGTCATCAGTAACTATCTTTTGGAGAAATCTCGTGTTGTGAAGCAGCcaagaggagagagaaactTCCACATCTTTTACCAGCTGTTATCTGGAGCATCAGATGAAACACTCAaGCTACTAAAGTTGGACCGAGACTTCAGCAAATATAATTATCTGAGTCTTGATTCTGCCACAGTCAATGGACTTGATGATGCTGCAAACTTTAGGACAGTTAGGAATGCCATGCAGATTGTGGGTTTCATGGAGGACGAGGTGCAGTCAGTACTGGAGCTGGTGGCTGCTGTGCTCAAGCTGGGCAACATAGAGTTCAAGCCCGAGTCACGAGTCAACGGCTTCGATGAGAGTCGGGTTAAGGACAAGAACGATCTGAAGGAGATGTGTGAGCTGTTGGGCATTGATCAGTCAGTGTTGGAACGAGCATTCAGTTTTCGCACGGTGGAAGCTAAGATGGAGAAAGTGTCAACAACACTCAACGTTGCTCAGGCCTATTATGCACGTGATGCACTTGCCAAAAACTTATATAGCCGCATGTTTAGTTGGCTGGTGAATCGAATAAACGAAAGCATCAAGGCTCAGACCAAAGCCCGGAAGAAGGTTATGGGGGTCCTGGATATTTATGGTTTTGAGATCTTTGAGGACAACAGCTTTGAGCAGTTCATCATCAACTACTGCAATGAGAAGCTTCAGCAGATCTTCATTGAGCTCACCCTGCGTGAGGAGCAGGAGGAGTATGTGCGTGAGgGTATTGAATGGACCAACATTGAGTATTTCAACAATGCCATCATCTGTGACCTCATTGAAAATAACCAGAATGGGATCTTGGCCATGCTTGATGAGGAGTGTCTGCGGCCCGGGACCGTGACAGATGAGACCTTCTTGGACAAGCTGAACACTGTTTGTGCTGAACATCAGCACTTTGAGAGCCGCCTGAGCAAAAACTCAAAGTTCCTCACAGACCACAGCTTGCCTCATAGCTGCTTTCGAATCCAACACTATGCTGGCAAGGTGCTGTATCGGGTAGAGGGGTTTGTGGACAAAAACAATGACCTGCTATACAGAGACCTGTCCCAGGCTATGTACAAGGCCAACCATTGCTTGATGAAATTACTTTTCCCAGAGGGCAACCCTGCCAAAGTCAACCTGAAGAGGCCTCCTACAGCCGGATTCCAGTTCAAAGCATCAGTGAGCACACTCATGAGGAACTTACAGACCAAGAACCCTAACTACATTAGATGCATCAAACCCAATGACAAGAAGTCAGCTCAAATCTTCACAGATTCATTGGTGTGCCACCAAGTGCGCTACCTGGGCCTGATGGAGAATGTGCGTGTTAGACGGGCAGGATATGCCTTCCGCCAAGCTTACGAACCCTGCCTGGAGCGCTACAAGATGCTCTGTAAGCAGACCTGGCCCCGTTGGAAAGGCCCTGCCAGGGAAGGTGTGGAGGTCCTCCTGAAAAACTTGGAGGTACCTGAAGAGGAGTTCTCCTACGGGCGCTCCAAGATCTTTATCCGGAATCCCAGAACTCTCTTTTTCCTGGAGGAGAAAAGAAGGCAGTGTCTGGAGAACTTGGCTACACTCATCCAAAAGATCTACCGTGGCTGGAAGTGCCGCACACATTTCCTGCTGTTGAAGAAGAGCCAGGTGGTGGTGGCCGCATGGTACCGCAGATTCGCTCAACAAAAGAAATACCAGAAGATCAAGAGCTCCTCCATAGTGGTTCAGTCTTTCATCAGAGGATGGAAGGCCCGCAAGTTGCTGCGTGAACTGAAATACCAGAAGAGATGCAAAGAGGCAGTGACCACTATTGCAGCCTATTGGCATGGAACACAGgtcCGAAGGGAATACAGGAAGTTCTTCAGAGCGAATGCTGGCAAGAAGATCTATGAGTTCACCATCCAGAGAATTataCAGAAGTATTTCATTGGTTTGAAGAACACCTTGCCTTCAATGTCGCCAATTGATAAGAGCTGGCCATCAAGATCttacctgttcctggaaggcaCACATGAGGAACTCCGAAAGATCTTCCATCTGTGGAGGTGcaagaaatacagaaacaagTTCACAGAAGAGAAGAAAGCCATCTATGAGGAGAAACTGGAAGCAAGTAAGATTTTCAAAAACAAGAAAGCTCTGTACCCCAGCAGTGTTGGGCAGCCTTTCAAAGGAGATTATCTGGAGATTAACAAAAATCCTAAGTACCAGAAGCTAAACAGTGTGGTAGATGAGAAGGTGCTTCTTGCAGATGTGGTTAATAAAATCAACAGGGCCAATGGCAAGGGTGCTCCCAGAATCTTCCTCCTCACCAAGAAAAACTTTGTTCTGGCTGATCAGAAGACGGGTCAGTTAAAGGCCAGCGTCCCGCTTCCTGATCTCGCCAGTGTCTCTGTCAGCACACAGAATGATGGCTTCTTTGCTCTCAAGCTCAAAGAGGGCACTGCATCAGCAGCCAAAGGTGACTTCTTGCTGAACAGTGATCGATTAATAGAGATCATCACCAAACTCTATCGCACAGGGGCTGCTTCAGCCGACGTGGAACCAGTCAGTGTTGACATCTCAGATGAATTCCTTGTGCAGTTCAAGCAGGATAAAGTGTGTGTCAAATTCATCCAGGGCGGACCCAAGAGCAGCAATCAAGTCGCCTGCAAACGTAAAAACAACCGCCTTCTGGAGGTGTCAGTTCCATCCCCATAATGACCAGTCATCTTCACTCCCTCTCAGGGTGCCATTTCGATGACTCTTCATCATCAAACCCAAATTTAAACACAGTTCTCAAATGACTGTGCAATTATTTTCTTGTCATTGCCATatcttatatttttaaagactTAATCATTGCATTGTTGAGACTCAAATATTCCATACAGCAGTATTTGGGTACATAAAGCAGACCTCATATTTACCTTGGGATAGAGGTGGGAGGTGATTCTTTCCTGACTGTCTTGGATAGGGTGCATTAAAAGTCCTGTTTAATCAAGACAATAATAGTAATGTTGTAATTATGATGCTATAGATCATCATACAGTGTCTGGGCATCATGTACATGTGAATGGGTGAAGTGCTGTACACATAGATTGCAAGCGAGAATTTTGTCCAATTTCCAAATTACTGCTGAAAGTTTGCACTTGTTTTGTTTACAcgtgggtaaaaaaaaaaaaagacattttgattGGTTTGTCTttgctttcttgtttttttccctctacacATTTTAATTCTCACTGTgcacaacttttttttgctgaattGCCAAAGTTTTATAATTTTGCAACAGCTGATCCTTTCAGGTAGACCTTATTCATAATACATTACCCTTATTATTTACAAAGCCAAATAACATGTAATCTCTACAGCCTGAAGGTAATCTCAGAAAACCCAAAGGCCTTGTGGGTCTTGCATTTGACCACAATGTATTTtttcaaaatagaaaataattttgtatactacttatttttcaaaattgtgTGGATCTTACTCTTGTGCAAAATGCAGTACAGCTGCATCCCAAACTCATGTGCACAAACTGACAACAATCCCATGTTTCATCTCTCAGAGGATTCTGGTTCTTCCCCCTGCTGTGTTTAGGAAATATCTGGGAAACTGACAGCTACAGTGCTCAGGAAGACCTAACAGAAAAGCATAGTACCACCGCATCTCTGACAATGTACTTGATTGACATTCTCAGTTGTCTGAATGTAGTAATGTCAGCTTCAGTGAAGAACCTGATCAGTGCTTTTGGCATGCTGAACTGATTTTTATGGAAATAGATTAGTTAGTGTGATGTCTAGCTTCAGGAAATGACAGAGAGCAATTTATGTACACCAGAGACTAAGCTGTGCTGTTTTACCCCAAAAAGTGTAGAATGAAGATGTCCCATGTTGCTTAATTACTCATAACTGCGTGTACACTAGCCAATTCATAAAACCTAAAGGGATGATTTTCAGGAAACCCCATTTTGTGTATGTAGAAGGCTATTAATAGTAgctgatatttatttacttatttcttaAATTTTTCACATTCTCACCATCGGAATATGGGTGGTTTTACTTTTTTAGCTGGCAAATGGTATATGCAGTGATTTACTTGGGACTAATCcagatgtttttgtgtgaaacaAGCATTATACATTGAATTATTTCAAATGTTGGAATGCTAACACAGTATGAACTACACCACCAAACCACACAGGTAAACTATATGTTCAGTTTAGGTTTTTGTCACTGATCAGGAAAGTCGGtgctttgcttttaaaaatacttaatataatattttctgtttattcttcAGTGGACATTTTGTGGTGTTAAATTTATGAAGGTCTTGGCAGACATTTTTGAAGACACAGCCCCTGGGAGAAGATTTAACATTTGCTTTTGCAGGTGTTCAATAATTTTCAAGCTTTTAAGATGATTATGTAATTTAACAGTAAACAGTAGTCAAGATGAATAGATTATTGTTCCTTTTTCATGAGGGATGAGGGATGGGGAAATTGTGCAAATTTACTGACATGTTCATTGATTGTGTACAGTCTTCAGCGCAGTATACTATAgttaatctcttttttttgtcaggaaGTTCAAGAGAAAAGAACTTTGTGTCTATTTTCAATGACTAAATGTAACCTGGTGTATCAAGAGAACATGGATGTGTTTCTATAATGACTAAATGCAACAAAGTAAAAGCagtcttttttgcttttttaaattaaagcaacaaataaataagttagGCAAATCAA

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98372 lncRNA downstream 29939 15085363 ~ 15125648 (-) True G82904
TU98389 lncRNA downstream 45105 15107053 ~ 15110482 (-) False LOC117597380
TU98371 lncRNA downstream 49971 15085363 ~ 15105616 (-) False G82904
TU98266 lncRNA downstream 150828 15002534 ~ 15004759 (-) True G82864
TU98263 lncRNA downstream 164101 14991216 ~ 14991486 (-) True G82861
TU98442 lncRNA upstream 158400 15371262 ~ 15374502 (-) True G82961
TU98718 lncRNA upstream 274221 15487083 ~ 15487834 (-) True G83171
TU98721 lncRNA upstream 335419 15548281 ~ 15600586 (-) True G83173
TU98774 lncRNA upstream 466588 15679450 ~ 15714440 (-) True G83216
TU98850 lncRNA upstream 617267 15830129 ~ 15887375 (-) True G83270
XM_034304607.1 mRNA downstream 40892 15106949 ~ 15114695 (-) True LOC117597380
XM_034304735.1 mRNA downstream 78371 15049883 ~ 15077216 (-) True dcaf6
XM_026946689.2 mRNA downstream 134239 15013261 ~ 15021348 (-) True slc35a5
XM_026912806.2 mRNA downstream 250852 14900159 ~ 14904735 (-) True dipk2b
XM_026947519.2 mRNA downstream 298067 14853744 ~ 14857520 (-) True fundc1
XM_026913001.2 mRNA upstream 205880 15418742 ~ 15424049 (-) True stx19
XM_026912869.2 mRNA upstream 213992 15426854 ~ 15430622 (-) False rsph1
XM_026912868.2 mRNA upstream 213992 15426854 ~ 15430622 (-) True rsph1
XM_026912611.2 mRNA upstream 223103 15435965 ~ 15441651 (-) True fbxl3a
XM_026910423.2 mRNA upstream 229522 15442384 ~ 15505351 (-) False mycbp2
TU98290 other downstream 78392 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 318194 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 602128 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 2427562 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 1007102 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1815445 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 4268258 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 4355889 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 5013866 20226728 ~ 20237615 (-) True G85848

Expression Profile