RNA id: XM_034304483.1


Basic Information

Item Value
RNA id XM_034304483.1
length 3379
RNA type mRNA
GC content 0.47
exon number 22
gene id atp1a1b
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13798037 ~ 13809445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTCCCGGTGCTGTGCAGCGGAGCGAGTTTAAAGTGTGTCACTTTGTTTTCATTGAGCAAGAACAAGTCGTGGGAGCTCAGCTAGGCAGCGGAGAACTACAGAAAGAACTTGAAGAAAGTTGGAGCTTCAGCAAAGATGGGACGCGGAGGAGGAGGACGAGATCAATATGACCTGGCAGCAACGTCAGAGCAAAGtgggaagaaaaagaataagaacAGAAAAGATATGGATGAGCTGAAAAAGGAAGTGGATTTGGATGATCACAAGCTGAGCTTAGATGAGCTTCATCGTAAATATGGTACAGACTTGAGCAAGGGCCTTTCAGCCTCACGTGCACAAGAAATTCTTGCCCGTGATGGCCCCAATGCCCTCACTCCTCCACCTACCACCCCGGAGTGGGTGAAGTTCTGTAAGCAGATGTTTGGAGGCTTCTCCATGCTGCTGTGGACTGGCGCTGTTCTCTGCTTCCTTGCTTATGGTATTCTAGCTGCAATGGAAGATGAACCAGCCAATGATAATCTATATTTGGGAGTTGTGCTGTCAGCTGTTGTCATCATCACTGGATGCTTCTCATACTACCAAGAGGCCAAGAGCTCGAAAATCATGGACTCCTTCAAGAACCTGGTGCCCCAGCAAGCTCTGGTTATCCGTGATGGTGAGAAAATGCACATTAATGCTGAGGATGTGGTTATGGGTGATCTGGTAGAGGTAAAAGGTGGAGACAGGATACCGGCAGATCTGCGTATCATTTCTGCACATGGTTGTAAGGTGGACAACTCATCTCTTACCGGAGAGTCAGAACCTCAGACTCGTTCTCCAGATTTCTCCAACGATAACCCTCTGGAGACCAGGAATATCGCTTTCTTCTCTACGAACTGTGTGGAAGGCACTGCACGTGGTATTGTCATCAGCACTGGCGACCGTACTGTCATGGGCCGAATTGCCACACTTGCTTCTGGTCTCGAGGTGGGCAGGACGCCCATCTCCATTGAAATTGAACACTTCATCCACATCATAACAGGCGTGGCTATCTTCCTTGGACTTTCCTTCTTCATCCTCTCTCTTATCTTGGGCTACAGCTGGCTTGAAGCAGTCATCTTCCTCATTGGAATCATTGTTGCTAATGTGCCTGAAGGTCTTCTCGCTACTGTTACTgTGTGTCTCACATTGACAGCAAAACGCATGGCAAAGAAGAACTGCCTGGTGAAGAACCTTGAGGCTGTGGAAACCCTGGGCTCCACATCGACCATCTGCTCAGACAAGACAGGAACCCTGACCCAGAACCGCATGACTGTTGCGCACATGTGGTTTGACAACCAGATTCATGAAGCTGACACCACCGAAAACCAGAGCGGAACCAGCTTTGACCGAAGCTCAGCCACCTGGACCTCCCTGGCACGCATTGCTGGTCTTTGCAATAGGGCTGTTTTCTTAGCAGAGCAAACTGATATTCCTATTTTAAAGAGAGATGTTGCTGGAGATGCCTCAGAGTCTGCCCTCCTGAAGTGTATTGAACTTTGTTGTGGATCTGTGAAAGAGATGAGGGACAGACATACAAAAGTGGCAGAAATCCCCTTCAACTCAACTAATAAATACCAGCTCTCAGTGCACAAGAACCCAGATTCTGCATCAGATTCCAAATACTTGCTTGTAATGAAAGGAGCACCAGAGAGAATTCTGGACCGCTGCAGCACCATAATGATACAAGGAAAAGATCAGCCTCTGGACGATGACATGAGAGAAGCTTTTCAGAATGCTTACCTGGAGCTGGGAGGGCTTGGAGAGAGAGTGCTGGGATTTTGCCACTTCTACTTGCCTGAGGAACAGTTTCCAGAGGGCTTCCAGTTTGATACAGATGATGTGAACTTTCCTACTGAGAATCTATGCTTTGTTGGTCTCATGTCCATGATTGATCCCCCGCGTGCAGCAGTGCCAGACGCTGTGGGAAAATGCAGAAGTGCTGGTATTAAGGTTATAATGGTTACTGGTGACCATCCTATCACTGCTAAGGCTATTGCCAAAGGTGTTGGGATTATCTCTGAGGGCAATGAGACTGTCGAAGACATTGCTGCACGCTTGAACATTCCTATCAATGAAGTCAATCCAAGagaTGCTAAAGCATGTGTGGTCCATGGTGGAGATCTTAAAGACCTTAGTTCAGAACAGCTAGATGACATCctgaaacaccacacagagaTTGTGTTTGCTAGAACCTCACCCCAGCAGAAACTGATCATTGTTGAAGGGTGTCAGCGCCAGGGAGCCATTGTGGCTGTTACAGGTGATGGTGTGAATGATTCTCCTGCACTGAAGAAAGCTGATATTGGCGTTGCTATGGGCATTGCTGGCTCGGATGTATCCAAGCAGGCTGCTGACATGATCCTTCTTGATGACAACTTTGCATCAATTGTGACTGGAGTAGAAGAAGGCCGGCTGATCTTTGACAACCTGAAGAAGTCCATTGCATACACTCTGACCAGTAACATCCCTGAGATCACACCTTTTCTGCTCTTCATCATTGCTAATATCCCTCTGCCACTGGGAACtgtcaccattctgtgtattgaCCTCGGAACAGACATGgTCCCAGCTATTTCCCTGGCATATGAAGCTGCTGAGAGTGATATCATGAAGAGACAGCCCAGAAACCCCAAAACGGACAAGCTAGTAAACGAAAGACTCATTAGTATTGCGTATGGACAAATAGGTATGATACAGGCACTAGCTGGCTTCTTCACATATTTTGTCATCCTGGCTGAAAATGGGTTCCTGCCAGCAAGACTACTTGGAATCCGTGTGCTTTGGGATGACAAATATGTCAATGATCTTGAGGACAGCTATGGGCAGCAGTGGACATATGAGCAGAGAAAGATTGTGGAGTTCACCTGCCACACTGCCTTCTTCACCAGCATCGTGATTGTGCAGTGGGCTGACCTGATCATCTGCAAGACCAGGAGGAACTCTGTCTTCCAACAAGGAATGAAgaatAAAATCCTCATATTTGGACTGTTTGAGGAAACTGCTCTTGCAGCCTTCTTGTCTTACTGCCCAGGGCTGGATGTGGCTCTGAGAATGTATCCACTCAAACCCAACTGGTGGTTCTGTGCTTTCCCATACTCTCTCCTCATCTTTATCTATGATGAAATCAGAAAGCTCATCCTCAGGCGCTATCCTGGAGGctgggtggagagagagacgtACTATTAGAACATCATATCAACAGAACCTGAGTCTTTTTGTTTAGTGCTCTGATAGTTTTGGTACTCTGGATTTTAACctctttacatttaaatatgtttttaaccAATTTTATACACCTTTTAACTGTGTAATATGAATAAACAATTAATGTAGAcccatttctttcatttaaagTA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97359 lncRNA downstream 442343 13354741 ~ 13355694 (-) True G82055
TU97338 lncRNA downstream 465534 13332290 ~ 13332503 (-) True G82035
TU97298 lncRNA downstream 490311 13307527 ~ 13307726 (-) True G82012
TU97286 lncRNA downstream 495780 13302054 ~ 13302257 (-) True G82000
TU97281 lncRNA downstream 497634 13299458 ~ 13300403 (-) True G81995
XR_004578196.1 lncRNA upstream 77202 13886647 ~ 13889526 (-) False LOC113523953
XR_004578194.1 lncRNA upstream 77202 13886647 ~ 13889526 (-) False LOC113523953
XR_004578191.1 lncRNA upstream 77202 13886647 ~ 13889526 (-) False LOC113523953
XR_004578193.1 lncRNA upstream 77202 13886647 ~ 13889526 (-) False LOC113523953
XR_004578192.1 lncRNA upstream 77202 13886647 ~ 13889526 (-) False LOC113523953
XM_026912643.2 mRNA downstream 82804 13451192 ~ 13715233 (-) True lrp1bb
XM_026946891.2 mRNA downstream 467146 13322630 ~ 13330891 (-) False si:dkey-3d4.3
XM_034304308.1 mRNA downstream 467226 13322630 ~ 13330811 (-) False si:dkey-3d4.3
XM_026946882.2 mRNA downstream 467330 13322630 ~ 13330707 (-) True si:dkey-3d4.3
XM_026946245.2 mRNA downstream 476499 13313992 ~ 13321538 (-) True inhbb
XM_026913033.2 mRNA upstream 12483 13821928 ~ 13828093 (-) True mab21l3
XM_034304898.1 mRNA upstream 22351 13831796 ~ 13832700 (-) True LOC117597444
XM_026913012.2 mRNA upstream 24056 13833501 ~ 13842569 (-) False rcan1a
XM_026913014.2 mRNA upstream 24056 13833501 ~ 13837448 (-) True rcan1a
XM_026912716.2 mRNA upstream 36177 13845622 ~ 13855186 (-) True si:dkey-67c22.2
TU96948 other downstream 1070012 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1081368 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2762476 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2826880 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3188995 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 743006 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 1018341 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1253980 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 2410519 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3218862 17028307 ~ 17039843 (-) False mettl8

Expression Profile