RNA id: XM_034304836.1


Basic Information

Item Value
RNA id XM_034304836.1
length 1701
RNA type mRNA
GC content 0.46
exon number 10
gene id il1rl1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2666856 ~ 2680900 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTGAGTGCATGTGTACATTTTTGCAGATGACACAGCTAAGGATGATTATTTGCTTCCTGGCTAAACTTGTCATGGCCTCTGCATCGAGGAATTACTCAGCCCAGTGTGAAAGCACTCCGGATGTAACCACTATCCATGTGATACAGGGAGAGGCACTGCGTCATCTCTGCCCCAATTCAGACTGCAATAGCGTGATGAACGATTCGCTGATATTTTGGTTCAAAAATGGAAGTGATGGAATCCAGCCAATCACAATGGAGGAAAATGAGCGGGTCCATTACCATGGTGCTGCCTTATACTTCCTGCCTCTAAGTCTGAATGACACAGGCCTTTACATCACACAATGGTGGTATAATGTGTCTGAATGTGATGAGTTTGAAACTGAAATTGTGGTCTATGAGACATTTCACAAAGATCAACTGTACAAAAACTTCTCAGAGCAAATAAGCATTCTGAAGCTTGACTGTCCAGTGTGGCAAAACATCGGAGAAACCATCACCTGGTACAAGGATTTCCGTCTGATCCCTAACAAGTCTGAAGACATACTTCAAGTTTACCTCCTTGCAAAAGATGCTCAAGGAATCTACACCTGTGTGTGCACGTGGGAGCATCACGGTCAACTTTACAACTCCAGTGGATCCTACCAGCTTCAAAGAAAAGAACATGAAGTGCCTTTTCCTCCAACCTTTCAATGTCCCATCAACAACTCTGTGAATTTTGTGGACCTGGGGATGGAGGTGAAGCTGAACTGCCTGGTGTTCTTTGGTCTCAATATAAGGGATGGTGGGAGAATTGTTTACTGGATGAGAAACAACAGCAGAGTGAAATCGTACGATAGggtggAAAATGGGAGAATACAGTCAAATTTGACGATTAGTCAGGTTTCGGAGAAAGACCTCCAATATGAATATTGTTGCATAGCCATAAGCCCATATAAATGGGACTTTGTATGCATCACTCTCAAGACCAGAAAATCCCTGCGCCCAGTGGTTATGACGTTTTCATGCACGGTCCTGTTCCTTCTGCTGGCTGCTGGGATGGTGAAGTGGGTCACTGTGGATCTGGCCTTGTTTTTCAGAAGCTTCAGAATAATGCAGAGTAAAAGAGATGATGGCAAAGTATATGATGCATATGTGATCTACCAGAAGGATAACACAGATgagaaaacaggaaggaaaGTTGCTCACTTTGTCAACCAAGTTTTGCCAGCTGTACTGGAGGATGCCTGCGGCTTTAAACTCTACATTCATGAGAGAGACAACCTACCTGGTGAAGATTACACTGAGCTTGTTGAGACGAGAATGCAGCTGAGCCGCAGGCTCATAGCTGTGCTGCCTCCAAAAGTCAGTCAACATCAAGGGCTCACACCCTCACTCTGTTATGACTGGCATGTGGGGCTGCACCGGGTGCTGGTCGATCAGGAGCTGAGAGTGATTCTGATTCAACTGGGAGATATGAAGGAGTATTCCCATCTGCCCCTGGGGCTGCAGCATCTCCTCCAGCAGACTCCACCCCTAAGGTGGGATGAGGCGAGTGGCCAAGCGACTTGCCCCAACTCCAGGTTCTGGAAGCAGGTGCGCTACATGATGCCTGTTCCTCCAATCTCCAGCTCTCGTGGTGTTGACTTGTAACTGTTAAGCATACTATAGATGCTTCTATCTGAAATCCTTAGAATTCACATAATACAGGAACATTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90626 lncRNA downstream 107704 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 135864 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 215907 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 365916 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 392217 2271867 ~ 2274639 (-) True G76057
TU90615 lncRNA upstream 6385 2684516 ~ 2753806 (-) False ifngr2
XR_004578280.1 lncRNA upstream 215245 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 236269 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 257950 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 287135 2965266 ~ 2966533 (-) True G76462
XM_034304201.1 mRNA downstream 144471 2483030 ~ 2522385 (-) True LOC113540058
XM_026936246.2 mRNA downstream 144473 2481594 ~ 2522383 (-) False LOC113540058
XM_034304215.1 mRNA downstream 420277 2234810 ~ 2246579 (-) False LOC113540088
XM_026945240.2 mRNA upstream 6377 2684508 ~ 2698756 (-) True ifngr2
XM_026945215.2 mRNA upstream 26229 2704360 ~ 2712278 (-) True LOC113545737
XM_026945224.2 mRNA upstream 28198 2706329 ~ 2712278 (-) False LOC113545737
XM_026945208.2 mRNA upstream 35881 2714012 ~ 2732151 (-) True LOC113545730
XM_026938245.2 mRNA upstream 56053 2734184 ~ 2743215 (-) True crfb4
TU90190 other downstream 617471 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 863211 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 992283 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 992671 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1004247 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 124756 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 126417 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 261190 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1135348 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2161829 4839960 ~ 4844879 (-) True G77283

Expression Profile