RNA id: XM_034304898.1


Basic Information

Item Value
RNA id XM_034304898.1
length 740
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC117597444
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13831796 ~ 13832700 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgatgtgtgtgtgtgtgtgtgtgcgtgactGTTTCATGTATGTGGGTGGATCCGTAGTCTCTAAGAGTCTCTGTGTGCCTATAATTTATGAGATAAGATCCAGGGAGGCTACTATACACCACAGGTTTTGcttcattaaatcattttataaatcAACCCACTGGAGATTCAAAGCAAAGGCAAATATGCTAGCACCAAATCATTCAGATGTGCAGTCTCTCCTGCTCTCCTTGCTTCAGCATTATCTTAATGAAACCTGGAACTTTCCAGCAGCGCCTCTGCCTCCTGCTGCTCACCAGCCAGCTGAGCCTTTGAGTGCAGTGCCAGTTAAAGCGCAGAGCCATGGATTCATCTACATTTTACTGATGGTTGGGCTCTTCAGCTTTTTCACCTTCGGCATCATGTTCAGTTTTATCCGCTCTAAAAAGCTGGAGAACTCGCAGGATCCGTACCACCAGTATATAGCCAGAGACTGGGCGAGCGTTCTGGCTCCGTCTGCAGCCATAATGCGGGCTCTCAAAAAGGAGTCTGTGGTTATTGGAAACCCTGCAGCCTTGGAGCATCTGCCAGGCTGAAGAGGCAAGAAACTGGAGCAGTGAGTGAGCACGGATATCTGATGACTGCTAAGTGCAAACATTTTGCTTTTAAGGTGATTACAAAGTCAAATTAGCCAAAAGATTAAATTGCATATTTCTCAAAAATCACAGTATTCACTATATGACTCTTTGCATCTGAAAT

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97359 lncRNA downstream 476102 13354741 ~ 13355694 (-) True G82055
TU97338 lncRNA downstream 499293 13332290 ~ 13332503 (-) True G82035
TU97298 lncRNA downstream 524070 13307527 ~ 13307726 (-) True G82012
TU97286 lncRNA downstream 529539 13302054 ~ 13302257 (-) True G82000
TU97281 lncRNA downstream 531393 13299458 ~ 13300403 (-) True G81995
XR_004578196.1 lncRNA upstream 53947 13886647 ~ 13889526 (-) False LOC113523953
XR_004578194.1 lncRNA upstream 53947 13886647 ~ 13889526 (-) False LOC113523953
XR_004578191.1 lncRNA upstream 53947 13886647 ~ 13889526 (-) False LOC113523953
XR_004578193.1 lncRNA upstream 53947 13886647 ~ 13889526 (-) False LOC113523953
XR_004578192.1 lncRNA upstream 53947 13886647 ~ 13889526 (-) False LOC113523953
XM_026913033.2 mRNA downstream 3703 13821928 ~ 13828093 (-) True mab21l3
XM_034304483.1 mRNA downstream 22351 13798037 ~ 13809445 (-) True atp1a1b
XM_026912643.2 mRNA downstream 116563 13451192 ~ 13715233 (-) True lrp1bb
XM_026946891.2 mRNA downstream 500905 13322630 ~ 13330891 (-) False si:dkey-3d4.3
XM_026913012.2 mRNA upstream 801 13833501 ~ 13842569 (-) False rcan1a
XM_026913014.2 mRNA upstream 801 13833501 ~ 13837448 (-) True rcan1a
XM_026912716.2 mRNA upstream 12922 13845622 ~ 13855186 (-) True si:dkey-67c22.2
XM_026912966.2 mRNA upstream 380843 14213543 ~ 14223378 (-) True si:dkey-192g7.3
XM_026946328.2 mRNA upstream 414769 14247469 ~ 14253293 (-) False gabpa
TU96948 other downstream 1103771 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1115127 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2796235 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2860639 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3222754 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 719751 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 995086 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1230725 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 2387264 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3195607 17028307 ~ 17039843 (-) False mettl8

Expression Profile