RNA id: XR_004578194.1


Basic Information

Item Value
RNA id XR_004578194.1
length 2032
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC113523953
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13886647 ~ 13889526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCCTAGCCTAGCCTAGCTCTCTGCTCCTGCTTTGGTTTATTGTTTGTAACCTTCTGCATTAGCATTCTGTTTCTAGACTGAGTGTCTTCTAGATGCTGCGGAAGGAAAGGCAACACAATAAATAGGAATGGTTAGCATGAAAGAAATCCTAACCTCCAACAACAGCACCAATAACATCATCTCCAGCAACTCTCCAATGTCTACCCACCCTGCAACTTGGTCTTCATGGTGACACCCTTGGATTGTGTGATTTTGATCATTACAGTAAACTTTACAACGTGTTGGGACGCTGAATTTTTGGTGTGATGATATTATGAATATGAATCCTGGGATAAGCATGGAACACTTTTTTTCTAATCGCATAAGGATTCTTAGGGAGTGTTTGAAAATGCCTTCTGAGTTTGGACAGTTGCCAGgatatgaaataaatcaaaGTGCCTCCTCTTTCCTTGCAACGATAAGAAGGCCAAGCACACTAAGAAACAGTGGTATGCCCTTCCCCTGTCTTGTGCCATGAGGATTAACTCTGTGAAAATAACAGTGATGCTGAGTTTTTCCAGGATGGActccctgactaggataaagcagtcactgaagatgaatgaatgtgcatCAGATAGAGTTGCTCTACAGTGTGGGCTCTCTTGTAACCTCACTGTTCTCTCACCTGTGGCTCATCACACATAAGTGAGTGTCTCTTAAAGAAACCCAGTGGTTACAGAGGGTTTGGTCCAGTTCAGAGttcattttaacaatgaacaagCCCTTCTCTCCCTCGCCAAGGCAAATGCCCTGTTCCCCTTCTCTTATTGACTGCATTTCAGTTATGGGAGAGGAGAGGTGTGAGATGTGTAAGAGGAACCGAAGCCGAGTTCAAAATGTTTCGGTTATGTACAGGTACAGAGTTTCATCAAAAATACTTCACTGTTCTTAGGAATCCCTCAGAGTACACTTGAAAACTGAACATTGGatcaaagtttttaaaaattgcattgcAACTTGTTGCAGGTGCTTCTCaactgaaaatgatttttacttttaaatgttgggattttttttttttcagttgagaaaaacaaaataaacagttgagaaaataaaacatttttagtgTAATTGAATAGAAGAtttcttaaatataaatctacatggCCAGGGGTTAGTGTCCATCTTGCACAAAGCCATTCAAAGAGCCTCCATTCCCCTGCTTTACACACTGTGAAAATACAGTACAGCTGGGGATGAAAATCCCAGAAACAGCTTGGCAGTTAGCAGTAAAACTGGTACGCGTGTCATCGGTGTGCATCATGGTTTGCAGACATGGACTTTACAGGTGGAAGTACTCCACAAGCTCCACTTATTAAGAACAAAATTGGCAAGACCAAAACCACAGAATTAGACACAAATGGTCTACAGTGTCAATGAGGTCCAGGCTCCCTTAGCCACATGTTTTGGCTGTGTCTGAAAGTCCTCTATGTGGGGCATAGTTGTGAACCCCAACCCTTGACTGTATTATCTGGAGTTGTCCCAGGGGAGGTACTAATAAAAAACACAGGCAGAATTTATTGCTTTCTTCAAAATGTCAGCAAGGCTGATTCTCCCTAAATGGAAAATTGATACCACCCGCTCAGAAAAGCTAGATAAATGAGGCAATGTCTCATCTTAAATTCGATCATCTTAGGCACACTAATGAAGGCTCCACCCAAATATTTTGAACAAGAATTTGTCCAAGTGAACACAAGATACTGTGCACCTCATTTTTAGAAAAATCCTATTTAGACATATGAACTCATGTAGAGTTACTTTTCTGGTTGCACGCCTGTCTGGAAATTGACTGAATTGTCTATTTGTACAAAAGcttcaaaaaaatgaaaaagtatattgaattaatatgtttaatatgatTAAGAAGCAGGAATTGAGGaattgaattacagccagaactattgttggagccgtgctgttatagaaaattaatgaacatcTGATCAAATGATATCTGAGAATTTAACAGgagagtagtagtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97713 lncRNA downstream 33052 13762417 ~ 13853595 (-) False si:dkey-67c22.2
TU97359 lncRNA downstream 530953 13354741 ~ 13355694 (-) True G82055
TU97338 lncRNA downstream 554144 13332290 ~ 13332503 (-) True G82035
TU97298 lncRNA downstream 578921 13307527 ~ 13307726 (-) True G82012
TU97286 lncRNA downstream 584390 13302054 ~ 13302257 (-) True G82000
XR_003402750.2 lncRNA upstream 27577 13917103 ~ 13919206 (-) True LOC113526249
XR_004578250.1 lncRNA upstream 54281 13943807 ~ 13951832 (-) True LOC113526223
XR_004578251.1 lncRNA upstream 55772 13945298 ~ 13951833 (-) False LOC113526223
TU97953 lncRNA upstream 404411 14293937 ~ 14295810 (-) True G82604
XR_004578237.1 lncRNA upstream 451512 14341038 ~ 14353940 (-) True LOC117597393
XM_026912716.2 mRNA downstream 31461 13845622 ~ 13855186 (-) True si:dkey-67c22.2
XM_026913012.2 mRNA downstream 44078 13833501 ~ 13842569 (-) False rcan1a
XM_026913014.2 mRNA downstream 49199 13833501 ~ 13837448 (-) True rcan1a
XM_034304898.1 mRNA downstream 53947 13831796 ~ 13832700 (-) True LOC117597444
XM_026913033.2 mRNA downstream 58554 13821928 ~ 13828093 (-) True mab21l3
XM_026912966.2 mRNA upstream 324017 14213543 ~ 14223378 (-) True si:dkey-192g7.3
XM_026946328.2 mRNA upstream 357943 14247469 ~ 14253293 (-) False gabpa
XM_026946337.2 mRNA upstream 357943 14247469 ~ 14253223 (-) False gabpa
XM_034304225.1 mRNA upstream 357943 14247469 ~ 14252950 (-) False gabpa
XM_026946321.2 mRNA upstream 357943 14247469 ~ 14252719 (-) True gabpa
TU96948 other downstream 1158622 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1169978 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2851086 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2915490 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3277605 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 662925 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 938260 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1173899 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 2330438 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3138781 17028307 ~ 17039843 (-) False mettl8

Expression Profile