RNA id: XR_004578245.1


Basic Information

Item Value
RNA id XR_004578245.1
length 1342
lncRNA type inter_gene
GC content 0.36
exon number 4
gene id LOC117597411
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13277900 ~ 13282536 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCAAAAGGTGTCCACACAgtgagaaaaatgtttaaagtctTATTACTCATGGTGGCTCTCACTGGTGGATCCAGCTAGATGGACAGATATTGGCTGTATGGATCAATGTGAAATCTGCTGAATGATGGTTACCACTCTAACCTTTTTTACCTGCTTCTAttgtgGGCTGGTTATGGCAAGCAGATTATGTTCATATGCCCTGGAAAGGAAAACAAAGCAGTTTTTGTGACAGAGGCTTTGCTATGACATAATTAAAGATGCAGTGGGGTTTTCTAACCTATGTTGTGCCACAATCTGCATTTAAGGGCCGAGTCTTCACTATaTAAGAACGTACAGAACAGCTGTGGCTACTAAAGGACAATTCACATAGACAGCTTTTATGAAGCATCTTTTAGTTAGGCATGCGCTTCTATTTTCACCAGTGTTTTAATATATGCCAGCTGTGAGATGCACTGTAAAAACGTTCAACTGTCTGACCTGCTGCACATTTTACATGCATGTAAGTGAAGCATACACACTATAGAAACTCTGTAGAAATCCATCAAGtccaaaatacattttgtttaattgtattaaaataacaaatttatttacataatactttGCAATAGTCAGTTTTGCACTTTACTGAAGGTCAAATCGCCTCTCCTGAATTTTTTActgcactttctctctctcatgaccTTCCTGTGATGCTCATTTAGGCCCACTCTAGAAAGATGAGTTTATTATTATCAAAAGCTCTAGTAACTGTACATACATCTACATATATCACTGTATATCTGTAACTATATACAGTGACTGTAATGGTGtgactgtttttcactcttGGAGCTTTTGTGAATTAAATTGTCTATATAATGCTCTCTGACAGGTTTAATTCTCTGATGATATGTAACGATTGATTAAAAACAGACTTTTCAACCCATTAAACAATGTTGTTGCTTGTAATGTCATCAGACATACATAATTAGTAGGCTAGGTAGTGACCTATGAGTTGTTAGTTCAACTGATAAAAATACAAAGTGTGAGTTCGTATatgttttcaataaaataaaatacagttctCGTACTGTTTTTGTTGCAAGCCTAGAATTTTCAATATAGCACAAAACTTGTATTGGCTGAGCGGAAACATATCTTGTGTATTTGGCCCCAGTGCCTGGCTTGGGACGCTGCATTATATTCTTTATGTATTCTATCATTATTTAGTTTATCCTCTTGTGTGTTTTGATTGTTTATTTGGACTATAACCAATATAAAAACGTATACCCTTGTCTCCACGTTTATTACACTGCCGCTAGCATATCAGTGAAAATTTGTCTTCTGTAAATTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97263 lncRNA downstream 27391 13215370 ~ 13250509 (-) False gli2a
TU97184 lncRNA downstream 178696 13096709 ~ 13099204 (-) True G81932
TU97040 lncRNA downstream 354807 12920916 ~ 12923093 (-) True G81802
TU96858 lncRNA downstream 577407 12700250 ~ 12700493 (-) True G81634
TU96832 lncRNA downstream 622038 12654336 ~ 12655862 (-) True G81612
TU97281 lncRNA upstream 16922 13299458 ~ 13300403 (-) True G81995
TU97286 lncRNA upstream 19518 13302054 ~ 13302257 (-) True G82000
TU97298 lncRNA upstream 24991 13307527 ~ 13307726 (-) True G82012
TU97338 lncRNA upstream 49754 13332290 ~ 13332503 (-) True G82035
TU97359 lncRNA upstream 72205 13354741 ~ 13355694 (-) True G82055
XM_034304676.1 mRNA downstream 27352 13191714 ~ 13250548 (-) False gli2a
XM_026912514.2 mRNA downstream 27352 13191714 ~ 13250548 (-) True gli2a
XM_034304637.1 mRNA downstream 192602 13074696 ~ 13085298 (-) True LOC113526136
XM_034304639.1 mRNA downstream 192602 13074697 ~ 13085298 (-) False LOC113526136
XM_034304638.1 mRNA downstream 192602 13074697 ~ 13085298 (-) False LOC113526136
XM_026946245.2 mRNA upstream 31456 13313992 ~ 13321538 (-) True inhbb
XM_026946891.2 mRNA upstream 40094 13322630 ~ 13330891 (-) False si:dkey-3d4.3
XM_034304308.1 mRNA upstream 40094 13322630 ~ 13330811 (-) False si:dkey-3d4.3
XM_026946882.2 mRNA upstream 40094 13322630 ~ 13330707 (-) True si:dkey-3d4.3
XM_026912643.2 mRNA upstream 168656 13451192 ~ 13715233 (-) True lrp1bb
TU96948 other downstream 549875 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 561231 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2242339 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2306743 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 2668858 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 1269915 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 1545250 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1780889 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 2937428 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3745771 17028307 ~ 17039843 (-) False mettl8

Expression Profile