Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578280.1 |
| length | 303 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC117597440 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047599.1 |
| NCBI id | CM018545.1 |
| chromosome length | 32114633 |
| location | 2893376 ~ 2897204 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU90615 | lncRNA | downstream | 139570 | 2684516 ~ 2753806 (-) | False | ifngr2 |
| TU90626 | lncRNA | downstream | 334224 | 2556506 ~ 2559152 (-) | True | G76325 |
| TU90634 | lncRNA | downstream | 362384 | 2530654 ~ 2530992 (-) | True | G76333 |
| TU90329 | lncRNA | downstream | 442427 | 2449719 ~ 2450949 (-) | True | G76093 |
| TU90288 | lncRNA | downstream | 592436 | 2300721 ~ 2300940 (-) | True | G76060 |
| TU90707 | lncRNA | upstream | 17196 | 2914400 ~ 2917047 (-) | True | G76400 |
| TU90778 | lncRNA | upstream | 38877 | 2936081 ~ 2936563 (-) | True | G76455 |
| TU90786 | lncRNA | upstream | 68062 | 2965266 ~ 2966533 (-) | True | G76462 |
| TU90785 | lncRNA | upstream | 68191 | 2965395 ~ 2966533 (-) | False | G76462 |
| TU90910 | lncRNA | upstream | 695614 | 3592818 ~ 3595411 (-) | True | G76570 |
| XM_034304223.1 | mRNA | downstream | 63555 | 2823816 ~ 2829821 (-) | False | tyw5 |
| XM_026942700.2 | mRNA | downstream | 63811 | 2823816 ~ 2829565 (-) | True | tyw5 |
| XM_026938295.2 | mRNA | downstream | 87520 | 2801006 ~ 2805856 (-) | False | LOC113541352 |
| XM_026938287.2 | mRNA | downstream | 87521 | 2801006 ~ 2805855 (-) | True | LOC113541352 |
| XM_026938205.2 | mRNA | downstream | 94374 | 2775840 ~ 2799002 (-) | True | crfb1 |
| XM_026937158.2 | mRNA | upstream | 22102 | 2919306 ~ 2920007 (-) | True | c5h2orf69 |
| XM_026939466.2 | mRNA | upstream | 31617 | 2928821 ~ 2953801 (-) | True | nabp1a |
| XM_026932051.2 | mRNA | upstream | 47070 | 2944274 ~ 2960366 (-) | True | cavin2a |
| XM_034304728.1 | mRNA | upstream | 71476 | 2968680 ~ 3060237 (-) | True | tmeff2a |
| XM_034304802.1 | mRNA | upstream | 736788 | 3633992 ~ 3745380 (-) | True | dnah7 |
| XR_004578243.1 | other | downstream | 87513 | 2802887 ~ 2805863 (-) | False | LOC113541352 |
| XR_004578242.1 | other | downstream | 87513 | 2804548 ~ 2805863 (-) | False | LOC113541352 |
| TU90190 | other | downstream | 843991 | 2049023 ~ 2049385 (-) | False | LOC113547075 |
| TU90050 | other | downstream | 1089731 | 1797982 ~ 1803645 (-) | True | G75893 |
| trnar-ucu_7 | other | downstream | 1218803 | 1674484 ~ 1674573 (-) | True | trnar-ucu_7 |
| trnas-cga | other | upstream | 42117 | 2939321 ~ 2939402 (-) | True | trnas-cga |
| TU90967 | other | upstream | 916275 | 3813479 ~ 3816036 (-) | False | faima |
| TU91765 | other | upstream | 1942756 | 4839960 ~ 4844879 (-) | True | G77283 |
| TU92001 | other | upstream | 2434380 | 5331584 ~ 5339633 (-) | False | LOC113534947 |
| XR_004578179.1 | other | upstream | 3425949 | 6323153 ~ 6324680 (-) | False | LOC117597343 |
