RNA id: XM_026927546.2


Basic Information

Item Value
RNA id XM_026927546.2
length 3856
RNA type mRNA
GC content 0.50
exon number 12
gene id tmtc2b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9822233 ~ 9918481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGACCACACGCGGCTCAGTCGCGACGTTTATTCGGCGTCCACCATGCAGCACTACACAAACACTCCGGCTGGAAGGAGACGCGAGAGCAGCTCGGCTTCCTGTAAACACCGCGCACATCCGCGTCTCACCCTGTGGATCAGCGCCGCGCTGCTCATCCTCAACATGGGCTAAGAGCAGCGCGCCGGATTACGCGCTTCAGCCATGGGGACGCGGATTTTCTGCTTtgatttctcttcttttccctgaaGACGGAAAGCGCGAATAGTGAATTGAAAGAGGGGATCTGTTAACCCTCTCGATCTGTATCTTGGTTTGCTCTCCTTGCTGttctttttgtcttgttttgggGAGAGATGATTGCAGATTTGGTGTGTAGCGCTGTGGCTCTGGTCCTGTACATCAACACACTGGGCGCTGATTTCTGCTACGAtgacagccgTGCTATCAAAACCAACCAGGACCTGCTTCCCGAGACGCCGTGGACCAATGTGTTCTACGACGATTTCTGGGGTACCCTGCTCACACACAGCGGCAGCCACAAGTCCTACCGGccactctgtacactctcctTTCGCATCAACTATGCCTTGAGTGGCCTAGAGCCATGGGGCTACCACTTAGCCAACGTGGCACTGCACTGCGCCGTAACGGCACTCTTCACGCGCCTGGCACGCCTGCTGCTGGGTACAGGCTGCTGGAGGCTGCTAGCAGGCCTGCTCTTCGCCTCACATCCTGTTCACACTGAGGCTGTTGCAGGCATCGTGGGCCGGGCTGATGTAGGTGCTGCGCTGTTTTTCCTCCTGGCACTGTTCTGCTACATGGGGCACTGTGACCAGCGGGCGGAGGGGGCACAGCGTCAGTGTTGGGCGTGGTTCGCGGGCAGCCTGGTCTGTTCGGCCTGCAGCGTGCTGTGGAAGGAGCAGGGCATCACCGTGCTCGCCGTGGCAGCTGTCTACGACGTGTTTGTCTTCCACCGGATGAAGCTGCAGCAGCTCCCTGGAATCTTCTACAAGAAGAAGAACATTCGCCTCCTGCTGAGTGTGTTTCTTCTGGGCTCCTGGGGGCTCTTCCTGCTGGGATTCCGCCTCTACTGGATGGGCAATAAACCTCCGAACTTCTCCAACTCTGACAACCCTGCAGCAGACTGCCCATGTTTTCTGACCAGGGCACTCACCTTCTTCTATCTACCTGCCATGAATGTATGGCTCCTCCTTTGCCCAGACAGGCTGAGCTTTGATTGGTCCATGGACGCGCTACCTCTTCTGAGGAGCATCACCGATTGGAGAAACCTCCATACCATCGTATTTTACGCCACGCTGCTGGCACTAGCATGGTTTGGCCTCTTTACGCGAACGTTCAAGGAGAAGGAGACAAATGGGAAAGCCCATGTAGCAAACGGAAAGTCCAGCACAAATGGACACAGTTATCATTCTGACTATGAACACTCCATTCCAGACTCAGACTCTGTTCAGACAAACTGGGCCAATGGGACAAAAAAGGACTATACAACTAGGACTTCTTTGCCCACCACTGAAAACGTAGTGGTCTTCTCATTAGGGCTGTTGGCCATCCCTTTCCTCCCTGCCACCAACCTCTTCTTCTACGTTGGTTTCGTGGTAGCAGAGCGGGTCCTCTATATCCCCAGCATGGGCTTTTGTCTGCTGGTGGCAGTGGGGATGAGGGCACTCTGGATCAGACTAAGGACAAACTCGTCCAGGACTCTGGTGTTCACCTGCAGTGCTTCTCTGGTTCTGCTATTTGGAGTTAAGACATTTCTGAGGAACCAGGACTGGCATAATGAGGAGATGCTGTACAAGTCAGGGATAACTGTGAACCCTGCTAAAGCTTGGGGGAACCTGGGAAATGTCTTGAAGAACCAGGGGAAGATGGCGGAGGCTGAGCGAGCCTATAGAAACGCTCTATACTACCGGAGGAACATGGCCGACATGCTGTACAACTTggGTCTGCTGCTACAGGAGAACAACAAGTTCTCAGAGGCTCTCCACTACTATAAGCTGGCCATAGGGAGCAGGCCAACTCTCGCTTctgCCTACTTGAACACGGGTATCATCCTGATGAACCAGGGCCGCTTCGACGAGGCCAAGAGAACGTTCCTAACCTGCGCTGACATCCCTGATGAAAACCTGAAGGATCCACATGCACATAAGAGCTCAGTCACCAGCTGCCTCTATAACCTAGGCAAGCTGTTGCATGAACAGGGCCACCAGGAGGAAGCCCTGTCTGTGTATAAAGAAGCTATCCAGAAAATGCCCAAGCAGTTTGCCCCTCAGAGTCTCTACAACATGATGGGCGAGGCTTACATGAGGATGAACAAGTTAGCTGATGCTGAGTACTGGTACAGGGAATCTCTCCGGGCAAAACCAGACCATATACCAGCACATCTCACCTACGGCAAGCTTCTGGCCATGACGGGTCAGAAAGCTGAAGCAGAGAAGTACTTTATGAAGGCCATTCAACTTGATCCCACTAAAGGAAATTGCTACATGCATTACGGTCAGTTTTTGCTGGAGGAGTCCCGCCTCCTGGAAGCTGCCGAGATGGCACAGAAGGCTGCTCAGCTTGACAGCGAGGAGTTTGATGTGGTTTTCAGTGCGGCACATATGCTCAGACAAGCCAGCCTCAATGATGCAGCGGAGAAGTACTACAAACAAGCAGCTAGCCTGAGACCTGACTACCCTGCAGCCTTGATGAACCTTGGTGCTATCCTTCATCTGAACGGCAAACTTCAGGAGGCTGAAGCTAATTACCTGCGAGCCCTGCAGCTCAAACCTGACGATACCATTACCCAGTCCAACCTGCGCAAGCTGTGGAACATCATGGAGAAACAAGGCTTGAGGACAATGGCCCCTTGACTCAAACACACTATGTGGAGCTCAGTGTGAAAGATACTTTCTCATGCTAAGTGATCCGTATCTTGAGCAGTTCAGCCAGAATTGTCTTTAGAGAGACTGAGATGTTTCCCTCGTAGGTTGGGGTCCAAAATTGGTACATTGGAGAACTTGCTTGAGAACTGCAACTTTATGACATGCAAGAACTTCTCTGGAATTTTTGCGCTGCACAGGACTCGGCGTTCTCAACAGGAGCACTTAAGTTGAAGTGGGCTGTTGGTATATACTTGAAGTTTCTCAATACTTTGGCTATTAATTAGGTAAATGATGCCTAATGGTATATGTAGGGCGGCGTTTGACATGAAGAGGTGCAAAATTAGGAAAGAATGAATTTTTGTGCTCAGAAACAAAGGAGCATTTGAATATCATTGGGTTCCTTGATTCATATGATTAGATTATCTAATCTTTAAGGAAGCTTTCTTGATGCTGATCACAGGAGTCACATAGTCAACAAAGAAATTCTAGCCATCTGTAATGgtgcaccattttttttttaccacattttccacttttttttttaataatgttgcaCCATTGCTAATTCCTATCACCTAGCCAAGTCCCCTTATTACAATTATAAAGCAGAGAGTGCAAAGGCGAGCTTCCAGGACATGATCTTTTCACATTGCTGCTCTTGCATCGTCACATGGCAGCTGAACATGCATGAAGGAAAGTGTTAACTGTTCTCATTCGTATACATGAGCTAACCGTTGCAAACAGTTGACTAGTGATGCACTAAACTACCAGAAAGAGACAAATAATGGCCACCAATAATGGTCAGTAATGGCCATCCCTCCATTGCAGAAAGGAGGGCCGATTATTCTCTCATGGATTCCCAGCCACTTGTGTGTGTCAGGATCCAAATTCACGATCTTCTAACACCAGGGTGAACATTTTACGGTTTAGCTATTCAGGAGCCTcaatcagctgttttttttttggttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114861 lncRNA downstream 50213 9750882 ~ 9772020 (-) False LOC113534661
TU114733 lncRNA downstream 318292 9417586 ~ 9503941 (-) False G96677
TU114732 lncRNA downstream 318292 9498305 ~ 9503941 (-) True G96677
TU114736 lncRNA downstream 404819 9417022 ~ 9417414 (-) True G96679
TU114521 lncRNA downstream 483449 9326681 ~ 9338784 (-) True G96484
TU115159 lncRNA upstream 153072 10071553 ~ 10095358 (-) True G97054
TU115237 lncRNA upstream 348497 10266978 ~ 10271950 (-) True ttc38
TU115308 lncRNA upstream 450782 10369263 ~ 10370417 (-) True G97172
TU115309 lncRNA upstream 452267 10370748 ~ 10371325 (-) True G97173
TU115347 lncRNA upstream 560586 10479067 ~ 10479287 (-) True G97204
XM_026927611.2 mRNA downstream 50235 9750980 ~ 9771998 (-) False LOC113534661
XM_034305082.1 mRNA downstream 50613 9750980 ~ 9771620 (-) False LOC113534661
XM_034305081.1 mRNA downstream 50613 9750980 ~ 9771620 (-) True LOC113534661
XM_026927780.2 mRNA downstream 89455 9694077 ~ 9732778 (-) True bicd1a
XM_026927782.2 mRNA downstream 89807 9695742 ~ 9732426 (-) False bicd1a
XM_026927423.2 mRNA upstream 79332 9997813 ~ 10018683 (-) True LOC113534539
XM_026927171.2 mRNA upstream 349987 10268468 ~ 10294823 (-) False ttc38
XM_026927169.2 mRNA upstream 366996 10285477 ~ 10294820 (-) False ttc38
XM_034305228.1 mRNA upstream 377370 10295851 ~ 10398875 (-) False mical3a
XM_034305227.1 mRNA upstream 377370 10295851 ~ 10398875 (-) True mical3a
TU114125 other downstream 1343997 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 2208137 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 2664745 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 2956894 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 3628086 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 349996 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 349996 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 1669520 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 2393601 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 2479206 12397687 ~ 12405281 (-) False znf143b

Expression Profile