RNA id: TU116638


Basic Information

Item Value
RNA id TU116638
length 1243
RNA type TUCP
GC content 0.41
exon number 4
gene id akip1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12420437 ~ 12423978 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTTCCCAGCAACACTtgggagaggaagaaaaagttCACCCTTTACTTTCATTTACACGCCCAGCAGATCTGAACTAATGATTCTCCTGTAACAGCAATGTCGGGACAGCGGTGACTGTTCACAGGAACTAGAAACAACAGGAAAACATCTCGTGTTGCGCAGAGCGATCATGGCAGGTCGGTGTTGGCTGGAGTCTTCACTGGATCGTTCGTCTAAACTCGGACTTGAGGTGTTGCAGAGAGCCAAAAGAAGATCGGAAACCTGGAAGAGTGTAGGAACATCTCACCGAGATGATTCTGGCACTGAGAAACACACGGAGGTTCTGgaacaccctgctgcccataTGACCTTGGATAGTGCTTTTGCAAAAATAGTGGAATGCATGTCTGAAACCAGCAATCAATGCAAGAGGGTTTACAGGTCTGCAAGTGCAGCAGAGCTTCGTGATCAAGAGCGAACCCATGTGTGTCGCTTTCACGCTAAGCAGCATCTACAGACTTCAAGGCAAATTCAAACCACTACCTTAACCTCCAAAAGAGCTCATTACACTGTAAGCAATTCCCACATgtagtgaggggaaataagtattcagacacttttgtttttgttatttaatatacttccagttcatatatccacttcaaatgtacacacacaatgttttctgattttatactttcaaatattaacaaaaagatGTATATTGAAAAGCATAACCAACAATCTACGGTAATTCCAAACATGATGACCTGAATTATGGCcagttctatttttgttttatttttgactgttccaaaagagttctgatttgtctaaatgcttttagacacacacacacatctctgtaCTTCgtttttagcagaggagttttgtgTGGGATGTAGGAACAGAGATGATTGAGGTgaagttcattgcttattgttctctgtgtaactgtagttcctgctgctttcaggtcgacCTGCAACTCTTTTTCAGCAACTGCTGGCTTTTCTGTTACTTTCCTTATCATTAGTGTGAGAGTGCATTATGAAATCGTGCGTGGCACACATGTTTGGGGATGATTAGTTGTGGTTCTGTGAACGTTcgttccacctgcatattatcagACCAATTGTACGGACAGGgatgtccattttttttatatatgaatatatacttTGTTGTTCATATCTGTCATACAGAAtgaaaagacattatgtgtgtaaacttgaaaaggatatacagtatgcactgggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116616 lncRNA downstream 144873 12275722 ~ 12276229 (-) True G98343
TU116615 lncRNA downstream 145691 12274275 ~ 12275411 (-) True G98342
TU116261 lncRNA downstream 549993 11870979 ~ 11871109 (-) False sspn
TU116205 lncRNA downstream 667904 11752525 ~ 11753198 (-) False plekhg7
TU116156 lncRNA downstream 728023 11690997 ~ 11693079 (-) True G97931
TU116665 lncRNA upstream 53925 12477903 ~ 12478277 (-) True G98383
TU116849 lncRNA upstream 288116 12712094 ~ 12713957 (-) True G98551
TU116867 lncRNA upstream 304466 12728444 ~ 12729493 (-) True G98555
TU116875 lncRNA upstream 314971 12738949 ~ 12742224 (-) True G98563
TU116850 lncRNA upstream 339921 12763899 ~ 12765281 (-) False G98552
XM_026927481.2 mRNA downstream 15821 12396507 ~ 12405281 (-) False znf143b
XM_026927480.2 mRNA downstream 15821 12396507 ~ 12405281 (-) True znf143b
XM_026927777.2 mRNA downstream 25440 12388873 ~ 12395662 (-) True wee1
XM_026927106.2 mRNA downstream 35749 12363559 ~ 12385353 (-) True swap70b
XM_026927616.2 mRNA downstream 75650 12311822 ~ 12345452 (-) True admb
XM_026926946.1 mRNA upstream 34537 12458515 ~ 12463241 (-) False tph2
XM_026926945.1 mRNA upstream 34537 12458515 ~ 12463241 (-) True tph2
XM_026927754.2 mRNA upstream 42168 12466146 ~ 12476898 (-) True tbc1d15
XM_026926986.2 mRNA upstream 58253 12482231 ~ 12489322 (-) True has3
XM_026927619.2 mRNA upstream 67417 12491395 ~ 12518992 (-) True tango6
XR_003403510.2 other downstream 15821 12397687 ~ 12405281 (-) False znf143b
TU116624 other downstream 106577 12312082 ~ 12314525 (-) False admb
XR_004578339.1 other downstream 810138 11588001 ~ 11610964 (-) False arntl2
XR_004578315.1 other downstream 2126279 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 2126279 10268477 ~ 10294823 (-) False ttc38
TU117111 other upstream 621845 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 1012923 13436901 ~ 13436975 (-) True LOC113534846
XR_003403499.2 other upstream 1126702 13550680 ~ 13562574 (-) True c6h15orf39
trnaq-cug_10 other upstream 1221431 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 1340948 13764926 ~ 13765056 (-) True LOC113534845

Expression Profile