Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578307.1 |
| length | 361 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC117597528 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 13311395 ~ 13318008 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU117133 | lncRNA | downstream | 128845 | 13182343 ~ 13182550 (-) | True | G98790 |
| TU117117 | lncRNA | downstream | 176222 | 13129200 ~ 13135173 (-) | True | G98776 |
| TU117108 | lncRNA | downstream | 282798 | 13027458 ~ 13028597 (-) | True | G98767 |
| TU116922 | lncRNA | downstream | 472853 | 12838220 ~ 12838542 (-) | True | G98607 |
| TU116902 | lncRNA | downstream | 507787 | 12802798 ~ 12803608 (-) | True | G98588 |
| TU117519 | lncRNA | upstream | 333229 | 13645575 ~ 13647786 (-) | True | G99118 |
| TU117536 | lncRNA | upstream | 420605 | 13732951 ~ 13768470 (-) | True | G99134 |
| XR_003403491.2 | lncRNA | upstream | 470429 | 13782775 ~ 13784737 (-) | True | LOC113534347 |
| XR_003403492.2 | lncRNA | upstream | 470429 | 13782775 ~ 13784674 (-) | False | LOC113534347 |
| TU117539 | lncRNA | upstream | 470446 | 13782792 ~ 13784697 (-) | False | LOC113534347 |
| XM_026927149.2 | mRNA | downstream | 174178 | 12988345 ~ 13137217 (-) | False | znf423 |
| XM_026927148.2 | mRNA | downstream | 174178 | 12988345 ~ 13137217 (-) | True | znf423 |
| XM_026927150.2 | mRNA | downstream | 174179 | 12988345 ~ 13137216 (-) | False | znf423 |
| XM_034305410.1 | mRNA | downstream | 326750 | 12952550 ~ 12984645 (-) | False | si:ch211-212o1.2 |
| XM_026927394.2 | mRNA | downstream | 326756 | 12948587 ~ 12984639 (-) | True | si:ch211-212o1.2 |
| XM_034305370.1 | mRNA | upstream | 62513 | 13374859 ~ 13395693 (-) | True | lonp2 |
| XM_026927072.2 | mRNA | upstream | 85929 | 13398275 ~ 13404730 (-) | False | il34 |
| XM_026927073.2 | mRNA | upstream | 85929 | 13398275 ~ 13404730 (-) | True | il34 |
| XM_026927304.2 | mRNA | upstream | 99014 | 13411360 ~ 13440802 (-) | True | sf3b3 |
| XM_026927145.2 | mRNA | upstream | 163185 | 13475531 ~ 13491284 (-) | True | aars1 |
| TU117111 | other | downstream | 259084 | 13045823 ~ 13052311 (-) | True | G98770 |
| TU116638 | other | downstream | 887417 | 12421102 ~ 12423978 (-) | True | akip1 |
| XR_003403510.2 | other | downstream | 906114 | 12397687 ~ 12405281 (-) | False | znf143b |
| TU116624 | other | downstream | 996870 | 12312082 ~ 12314525 (-) | False | admb |
| XR_004578339.1 | other | downstream | 1700431 | 11588001 ~ 11610964 (-) | False | arntl2 |
| XR_003403539.1 | other | upstream | 124555 | 13436901 ~ 13436975 (-) | True | LOC113534846 |
| XR_003403499.2 | other | upstream | 238334 | 13550680 ~ 13562574 (-) | True | c6h15orf39 |
| trnaq-cug_10 | other | upstream | 333063 | 13645409 ~ 13645480 (-) | True | trnaq-cug_10 |
| XR_003403538.1 | other | upstream | 452580 | 13764926 ~ 13765056 (-) | True | LOC113534845 |
| XR_003403544.1 | other | upstream | 471209 | 13783555 ~ 13783624 (-) | True | LOC113534852 |
