RNA id: TU117519


Basic Information

Item Value
RNA id TU117519
length 719
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G99118
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13645575 ~ 13647786 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTTTCTTACGCTGAGGTGATGGCTCTGTAGCGCTCCTGCCCAGCCGTGTCCCATATCTGGGCTTTTACGGTCTTCCCATCCACCTGAATGCTGCGAGTAGCAAACTCCACTCCAATAGTGCTTTTACTTTCCAGGTTGAACTCGTTGCGGGTGAAACGGGACAAAAGGTTACTCTTCCCCACTCCAGAGTCTCCAATCAGGaccacttcaaaaCAAGTAGTCGTATTCGTCGTCTCTTGTTCCCATCTTGCTAGAAATGAAGGTTAAACAGTGGTAGGTAAACACTTATCGAGCTAAAATGGAAACAGCCCGCTTGGTCCTTCCCGCTGCTGCACTGCAGTCAGATTGTGTGCAACTCGGTAGCCATGCTAACTATTTAGCAAGCGTGCGGCCTTCATTCAAGGGTTCAAAACAATCGctacaatttcaaaataaaagtcattgTTACGCGATGGCTATCGACAATCAGTAAAAGATGGTCCCTGAGTGATTTCTGTTACTAGTTGAGAAACGAGAGGCTGACATATGCGGTATATGTGAGCAAGGCGTTGAAACAGCGAATTAAAATAACTCACTTATATTTATCCCTCTTTATTTGTGCTCCCCTCTTCTTGTTACTGAATTCAGATGAAGGCTTTGACCGGTCCACTTAAGAATATTTCCTTATGCTTTGTGCCACTGTTGTGCTGTATCCGCTTTAgtaaacttatttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117412 lncRNA downstream 327567 13311405 ~ 13318008 (-) False LOC117597528
XR_004578307.1 lncRNA downstream 333229 13311395 ~ 13312346 (-) True LOC117597528
TU117133 lncRNA downstream 463025 13182343 ~ 13182550 (-) True G98790
TU117117 lncRNA downstream 510402 13129200 ~ 13135173 (-) True G98776
TU117108 lncRNA downstream 616978 13027458 ~ 13028597 (-) True G98767
TU117536 lncRNA upstream 85165 13732951 ~ 13768470 (-) True G99134
XR_003403491.2 lncRNA upstream 134989 13782775 ~ 13784737 (-) True LOC113534347
XR_003403492.2 lncRNA upstream 134989 13782775 ~ 13784674 (-) False LOC113534347
TU117539 lncRNA upstream 135006 13782792 ~ 13784697 (-) False LOC113534347
TU117568 lncRNA upstream 195033 13842819 ~ 13843229 (-) True G99165
XM_026927136.2 mRNA downstream 2003 13612796 ~ 13643572 (-) False dennd4a
XM_026927135.2 mRNA downstream 2003 13612796 ~ 13643572 (-) False dennd4a
XM_026927134.2 mRNA downstream 2003 13612796 ~ 13643572 (-) False dennd4a
XM_026927133.2 mRNA downstream 2003 13612796 ~ 13643572 (-) True dennd4a
XM_026927280.2 mRNA downstream 56591 13583262 ~ 13588984 (-) False ints14
XM_026927092.2 mRNA upstream 4272 13652058 ~ 13763456 (-) False megf11
XM_026927093.2 mRNA upstream 4272 13652058 ~ 13763456 (-) False megf11
XM_026927089.2 mRNA upstream 4272 13652058 ~ 13763456 (-) False megf11
XM_026927090.2 mRNA upstream 4272 13652058 ~ 13763456 (-) True megf11
XM_026927442.2 mRNA upstream 138361 13786147 ~ 13789542 (-) True rpl4
trnaq-cug_10 other downstream 95 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403499.2 other downstream 83001 13550680 ~ 13562574 (-) True c6h15orf39
XR_003403539.1 other downstream 208600 13436901 ~ 13436975 (-) True LOC113534846
TU117111 other downstream 593264 13045823 ~ 13052311 (-) True G98770
TU116638 other downstream 1221597 12421102 ~ 12423978 (-) True akip1
XR_003403538.1 other upstream 117140 13764926 ~ 13765056 (-) True LOC113534845
XR_003403544.1 other upstream 135769 13783555 ~ 13783624 (-) True LOC113534852
XR_003403543.1 other upstream 138992 13786778 ~ 13786848 (-) True LOC113534851
XR_003403542.1 other upstream 139348 13787134 ~ 13787202 (-) True LOC113534850
XR_003403537.1 other upstream 139871 13787657 ~ 13787786 (-) True LOC113534844

Expression Profile