RNA id: TU117779


Basic Information

Item Value
RNA id TU117779
length 3644
RNA type TUCP
GC content 0.40
exon number 2
gene id G99341
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14520801 ~ 14524480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAAATTTTTTGGAGCCAACCAAACAAAACTGATTCCAAGAGAGCATTAGTGTGAAACAGAGAAGAGTATATTTATTACTATCGAATAactatagtacagtatagttaTTTATTGTTGCAAATAATAATGTTCATCAACACATGTTCATAAatacccacacatacacacctcttTTGGACGCATGTTACTACAGAACTTTAAAAAGAGTCCTACTGGACATAAACTGGCGTcaccctctctcttttcttctcactCACTCCATTACCACCATGTGAGGCATGAGTAAGGATCCCAAAATACATTTGTTATGCAAACATGCTGTTAGACACTACCTCAATGACCACTAAACTGACACTGTTGCTTTTTAAGAGAAACctgctttttcactttttcatctctctgtctcactcagtCCTGAACAATGGAAAGGCCCTTACGCTGAAAGCGCAGGGAGGCTGGATTAGTGAATGCCATGCTAATGTTATTTAAGGATTATAGGACCTAAGAAGGACAAGAAGGATAGTCTGAAATCTGGTAGTCACAGAGCCAGATTCTGACAATAATCAAGTCAGATTAGGGGCTATAAACAACAATCAGTACTCAAAATAAAATGGAGCTCCAGTTTTAGTGCACTAGAATCCAGCAGTGTTTAGTTATTTCCTTCAGAGACACATAATTCTATTCACCAGTTAATTAACAGTTTTATGGGTGTCTTTGAGCAGGAAAATCACCTAATTTTGCTCACACAGAATAGGCACAGGCAAAAGAAACAGGCACCTCTGCTCTATGTTTGTTAAGGTGTTTTTAAGTTTTCTTAGTgtcataaatacaaaatatgtgTGAATTTATACTAGATTAAACTCTGGACCTTATTAAGTGTAGATGacagtaatttaaaaatgtgttacagCAAAACAGTATCATCATTAAAGTAAAAGATGACAGTGCATATACTAAAGAACACACAGTAGAAACATGACCCAGAAACATAACGCAGTGATTTGAATACAGGATTAGCAGTATGTTCTATCTGAATTGAAGTGTAGCTTAAAATAATTTGTGTAGTGTTACAAGAGACAGTGATATCCTGTAATCAATGATATTAAATGCTCTTTTATTAACTTcagtacattttattacatgtcATTCTAGACAAGACATGTAATAAATGTGACAAATTCCGTGAGGcctacacagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcacagagCCAAGAGGGTCTAAACTCGTAAATCTAATTGTGTAGAAAGTAAAGCTTTAAGTCCTTGATATGTGCTGCTTTCTATATGTATTGTAAAAACAATGAGAGTAACAAACATTTCTCCATACCTGATTATATAATACGTGGTTTTATTTGGATCTCAGTTATAGGTGGTTTTATCTAGATCTCAGTTAGTCCTCCTGGGGGCTTTCAAGATAAACAGTAGCTATTCTTTTCTCCTGGTAGATTTTTAATGAAGGGTCAGTCTTCTGGGTCTGTACAAACTCTTGCACATTGGCTCCATTGCCTTTCTGATCTTGAGAATCCATCCCTTCTTTGCCTATCGCAGACGCGCTGTTGTTAATACCCATTTGGAACGTGAAGGATGTCTCATTAGGCCCCAGCCTGATGACCTTCTCTGTCTTGCTAACTTCACTACCTGAGCTCAAAGCTTCGGTTTCCTCAAGGCTGGACATCCATGGCATTTCCCCTTTTTGGACCTCCTCTGTGGAAAGTCTGATGGTATACTCATCATCAGCTTCAGCACTGTGCGCCTGGTGGAGGTCAGAGCTTGAGGACTGCAGTGCTGCCATCACCTGTTCCTGTAACAGGTCATCTGCCTCATTTTGCAAGAGTCCAGAATCCTCCAGACTCTGGGAAATATTAAGCTCTGCCACAAAGGTCATTGTTCCATTGTCTGGAGATTGTTGCACTTTCTGGATGTTAACAGACAGGTTCTCAGAACTTTGACCAGCTTTGGTGAAAGAAACAAGTTCTTCTTTTAGCTCTCCAGACACAGTGCCTTCTAGCTGCTCCAGTGCTCCCTTTAGCTGTTCTCTGGGGTCCAATGACTCTTCTTTCAGGATCTCCAGCATAGACTCTTGAATTCTGGGAGGAACATGCACCTCCTCTTCTATAATACACTCTGGAATTCCAGTGGTGTCTCTTTTGACATATTCAGGTGACTCCCTGTTATTTTCCCCTTCATCAGAGTACCTCCTTTTTGTAGGCAGACCTTCTTCCTGGTAGTATCTCTCATCTGAAAGGTCTTCCACCACTCCATAATGTCCATAAGACATAAATCCTCCACCCTCCTCTGAACCAGACATGTTCTCTTCAGGGGTGGAAACAAAGTATTCTTGTGTTTCTTGGCCCTGAGCATAGTATGGGAGGCTCTCATCTCTGGACACTTCCTGCACCTGCACAAATCCACTCTTTACATACTCTGAGGCTTTCATAGACTCGTCAGTGTTTTCATGTTGTTTAGCTGGCTGAGGTTCATTCTCTGGTTCTTCAATGTGAAAGAACATTGATGAAGGTTGGAAGTACGCTTTGGACTCAACTTCTACAGTCTCTTCAATTTCACCTTCCCCTTCATCGGTATGAGATTCCAATGGTGCCTCCATTATCTCCACTTTAACCGACTTGTTTTCTAAGCTTTCACCTTCAAGACCAAGACGCAGAAGGTTCTGAATCATGCTTCCTGTTGGGGTTCCTTCAATATCCTCCAGAGAGACTTTATGTACCCCCTTACTAAGGAGTTCATCAAGAGCCGAGTTGTCTGACACATCCAGGTCTTCTTCCACTTTTGACTGCAGGACTATCTGAGTCTTGGTGCTTCCATCCTCTTGCTCTGTTTTCTCTACATGGTATGTGATCTTTGAGTCAGCAGATGAACTGAGATTTGTATCAAAGCCAGCAGGCTTTATGACCTTCTCAATAATTTCTTCCATGGACACTGAGTCCAAAACTTTTTCCTCACCTGCAAATACCTTTGGTCCCACATTTCCAGAATCTTTCAAATCTGTCTTATCTTCTTGGTTGGATTCCTTATGCTGGATAAATGGTGTTGCATCAGGTTGCACTGTTGCTTTGGCATGATCTGCTTCTGTACTCTGATCTTTTCTTTCATCTTCCTTAACATCTTCCTCAACAACTTTCTGATGGGTTTCTGCATTAGTGTTCAGGCTCATCATAGGTGGTGCCACAACTCtcactgattttatttctattgCTGATGAGGTAGTGGGGAatgatttgttttgtatttctgtCTGGAAAAGATCAGGCGAACTCCTTGGTTGGCTTTTAGACACACctttgatgattaccttctgtTCTTCCATCACTTCTTTGTTAGTCTTACTAGCAGAGACATCAGGTTTGGCTGCACTTGGTGTAACTGAAGCCTGTTTTGCTTTGCTGAAAGCAATCATGTCTCTTCTTGCAGCAGGACTTTGTTGGGCATGGTTTGAAATAGTGATAGGCAAAATCCTGGAGGTTCTCATGCTGGAAATGGGTTCTACATTCCAGACATCATACCCTATTAAATTCCTTCTCACTTCTGGTCGACTGGCTGTGATGGTAGAGACTCTTGGAGTGTAAGGATGGGCTGGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117693 lncRNA upstream 202147 14317597 ~ 14318654 (+) True G99276
TU117678 lncRNA upstream 258284 14261441 ~ 14262517 (+) True G99261
TU117677 lncRNA upstream 260059 14257912 ~ 14260742 (+) True G99260
TU117377 lncRNA upstream 530648 13989942 ~ 13990153 (+) True G99006
TU117370 lncRNA upstream 564534 13954636 ~ 13956267 (+) False smad3b
TU117806 lncRNA downstream 105855 14630335 ~ 14631361 (+) True G99362
TU118021 lncRNA downstream 201138 14725618 ~ 14725938 (+) True G99516
TU118023 lncRNA downstream 205504 14729984 ~ 14730183 (+) True G99518
TU118233 lncRNA downstream 502007 15026487 ~ 15027086 (+) True G99704
TU118234 lncRNA downstream 530787 15055267 ~ 15058771 (+) True G99705
XM_034305411.1 mRNA upstream 67725 14426532 ~ 14453076 (+) True cftr
XM_026926947.2 mRNA upstream 155996 14355893 ~ 14364805 (+) True bida
XM_026926948.2 mRNA upstream 155996 14355923 ~ 14364805 (+) False bida
XM_026927020.2 mRNA upstream 165881 14349175 ~ 14354920 (+) True wee2
XM_034305008.1 mRNA upstream 165881 14349178 ~ 14354920 (+) False wee2
XM_034305164.1 mRNA downstream 4396 14528876 ~ 14533258 (+) False pgpep1l
XM_026927336.2 mRNA downstream 6003 14530483 ~ 14533258 (+) True pgpep1l
XM_034305028.1 mRNA downstream 116480 14640960 ~ 14648967 (+) True fam169b
XM_034305029.1 mRNA downstream 116480 14640960 ~ 14648967 (+) False fam169b
XM_034305030.1 mRNA downstream 116480 14640960 ~ 14648967 (+) False fam169b
XR_004578308.1 other upstream 480019 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 731411 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 805035 13691607 ~ 13715766 (+) True G98946
XR_004578350.1 other upstream 1665248 12837299 ~ 12855553 (+) False nlrc5
XR_003403541.1 other upstream 2257370 12263279 ~ 12263431 (+) True LOC113534848
XR_004578337.1 other downstream 776002 15300482 ~ 15345968 (+) False carmil2
TU118902 other downstream 1824977 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 2075777 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 2875946 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 2965066 17489546 ~ 17493092 (+) False LOC113539654

Expression Profile