RNA id: TU117962


Basic Information

Item Value
RNA id TU117962
length 2216
lncRNA type intronic
GC content 0.40
exon number 2
gene id G99482
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14601223 ~ 14603472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcttctttctagaaataaattagcaaaattatctgccaatagaacaagattatttcacgcttgaaattagtaaaatatgtttaaaaataggtGTAATAATCTTGTAACAGGTTTagtgtaatcttataataggaaatactagatgaATTTTactgtattcaagatattttcacttgctaagatgtcattttttgcagtgcaaaaaaaaaaaaaaaaaaagatcagtgcTTTTCGGTTTTATTCTCCATAAAGCAGCATTCGTTCTGTTCCCCCCagttcctgagtgtgtgtggttgtcAGCACCTGGTCGAACAGGCACAGGTGGCAGTGGGCGCTTGCTGTGTCTCCCCCTCGGCAAGTGAACTGCTCCTTGGCTGCCTTCTGCCTCTCGTAGGAATCACCAGTTGGCACACTGGCCTGGGTGAGGTTTGCCAAGGGTGAGATGTGCCATCTCTTTTCACACTCTCAGCGTCCACTGTCCATTCAACACTTTTGTCTAAATTCAGTTTCTTCTGCATTTCGTAAAATGTTTCCTGTACTGCTCTGGTCCAGTAGCTAGCATTGCAGAGTTGCTGAAAATGAATGGAAGTAAATGCTAGCTTGCTATCAGGAACTGTAGGAAACTCTGCTTTGTTTATCGAGACCACAGAGTTCAGCGCATTGCTCTGATACAAGTATGAGCCtctttatgattatgatttattCCCATATCCTGTCATTCATCGTTTAGCATTTATACCACACAACAGCCATCATCATGCAGCTTAGCCACATGTGAGTGGAAGTAaccaatattttctaatgagaTGGAAAAATctgtgaattaaaaaattagCTGATCAttagaaatgtaatttaataatcatctatcattttttttacttatagaTTTGTATTACTCGTAATATCTGCTGTAAACAAGGTGCTAAAACATATAGTTTAAGTTTTAAGCTTTTTGTTTAGATAGAATGGCGTGACGTCTCACATAAGCCTTTTTTattgctggttttcttttattaaatcagTAAAGTGAATTGCATCTTTTGGCTATCCTTGCAGCATATTTGAGGTAGTATTTTAACATTCAAAAAGCAGCCCTAATCATCAATATGATGTTAAATCACACTGTGGTCACATTCTTTTTGTAGCTAACAGGCTGTAGTGCGTGTATACATGTGGCCTTGATAGACAGCTTGcaatctgagagagagagagagagagagagagaggcatgagAAAGAAGTGCCGTACTcttagtgtaaacacacactcacacccactgCTGTCTGCTTGGTCATTTACTGTGGCAGATCATCAAGCATCATGCCTGTGTCCATTGCCTGTGGTGAATAAGAAGTCAGGCCAAATGTAGCTAAGAGCTTCTTTGTTTCCCGTCACCTTGTGTGTGGTCTGTTTGCCGCCTGCTTATATGGCACAATTCCCTCTAGTGTGATTAGAAATGGCTGCTGAAGGTTAGGAGTTCAAACGGCACCCAGAAACAAAGCAATACTTCACTCAGAAACGCTTACATTACTAATGATGAATGACGTGTTGACCAGCTAGCATTGTTCATGCTAGATTTCACTGGTCGTTCGCCATGCTGGcaatttttgacattttcttttcgAATAGCGTTTACACAGTTCACAGTTCATAGTTCTTTTAGAAACAGTTCACACAAGTCCAGTCGGAAGGCTCCCCTGCTCTCTGGTGTCCAGCTAAGCTTGTTTAGAGCGTCCAGCTGCCCCTCTTGTGTGGCTGGCGTTTGTATCCCCTTGGAGGCAGTGGAGGCTGGAGTGAGCTGTCGCTGTCGGGAAAGCGGGGGCAGAGGCACATTAGCCAGCTTTTCATCTCTTCTGCCACTTGTGtcggaggagagagagtgagtgcaCGCTCATGCTGGTAAACACACAGCAAAGCCTTTGAAATCCCTCCTTCATCATCAATTACTAAATACCATtaagcgtgcgtgtgtgtgtgtgtgtgcgcgtgtgtgcgtgtccaATAGACACAACAGGCATGAACTCCTCGGCTCATTATGTACATAAGGGCCTGTGTGTAAGTATTAAATAAAGTGTGTCTCTATGACTGTCTTCAGCTCTGGAATTCTGTAATCAGCAGCTCAAAATTTTGCAATGATCtgactgtatatttaattatattatatctaataatatatataatatttaatatatatttaataaacatacatcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117933 lncRNA downstream 65213 14533820 ~ 14536010 (-) True G99453
XR_003403487.2 lncRNA downstream 81439 14510924 ~ 14519784 (-) True LOC113534271
TU117912 lncRNA downstream 148116 14448856 ~ 14453107 (-) True G99433
TU117867 lncRNA downstream 245604 14349718 ~ 14355619 (-) True G99401
TU117878 lncRNA downstream 267089 14328927 ~ 14334134 (-) True G99408
TU117973 lncRNA upstream 44606 14648078 ~ 14648993 (-) True G99493
TU118323 lncRNA upstream 545931 15149403 ~ 15150315 (-) True G99780
TU118318 lncRNA upstream 556731 15160203 ~ 15168426 (-) True G99775
TU118330 lncRNA upstream 567839 15171311 ~ 15173434 (-) True G99784
TU118350 lncRNA upstream 572703 15176175 ~ 15180912 (-) True G99801
XM_026927335.2 mRNA downstream 71366 14520667 ~ 14529857 (-) True synm
XM_026927341.2 mRNA downstream 98993 14454337 ~ 14502230 (-) True cttnbp2
XM_026927342.2 mRNA downstream 98994 14454337 ~ 14502229 (-) False cttnbp2
XM_026927052.2 mRNA downstream 178447 14401868 ~ 14422776 (-) False asz1
XM_026927160.2 mRNA upstream 54498 14657970 ~ 14667731 (-) True anpepa
XM_026927018.2 mRNA upstream 66841 14670313 ~ 14673362 (-) False si:dkey-12e7.1
XM_034304965.1 mRNA upstream 66841 14670313 ~ 14673239 (-) False si:dkey-12e7.1
XM_034304963.1 mRNA upstream 66841 14670313 ~ 14673239 (-) False si:dkey-12e7.1
XM_034304964.1 mRNA upstream 66841 14670313 ~ 14673160 (-) True si:dkey-12e7.1
XR_003403523.2 other downstream 254215 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 812376 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 813024 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 813437 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 814021 13787134 ~ 13787202 (-) True LOC113534850
TU118530 other upstream 743694 15347166 ~ 15354637 (-) True tmem170a
XR_004578368.1 other upstream 3483183 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 3583975 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 4747290 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 5376597 19980069 ~ 19980259 (-) True LOC113527007

Expression Profile