RNA id: TU118021


Basic Information

Item Value
RNA id TU118021
length 321
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G99516
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14725618 ~ 14725938 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTTGTAGCTGTCCTTGACTGGGCGTGTCTGCCACTCCTGAAGCACACAAGTCAGCTGTTGCTCTTCATCCTCCACTTCTACCCACATCACTCGTACATGGACAAAGGGGTTCACACACTGGCTGAATGTTCGTGCCATTAGGCCTCTTGCCTCCAATACAGTCACCACCAACCGAGATTGCAGCTGATCATAGAAGAGTGAGAAGCGCAGCGTGCCCTGAATCTGTTCCTCATCCACATCCCCAAGACTGTCTGTACTGCTGGCCAGATCAGAGCTGCTGGACAGGCAGCAACTTAAGGGTTCCAATTCATCATTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117806 lncRNA upstream 94257 14630335 ~ 14631361 (+) True G99362
TU117693 lncRNA upstream 406964 14317597 ~ 14318654 (+) True G99276
TU117678 lncRNA upstream 463101 14261441 ~ 14262517 (+) True G99261
TU117677 lncRNA upstream 464876 14257912 ~ 14260742 (+) True G99260
TU117377 lncRNA upstream 735465 13989942 ~ 13990153 (+) True G99006
TU118023 lncRNA downstream 4046 14729984 ~ 14730183 (+) True G99518
TU118233 lncRNA downstream 300549 15026487 ~ 15027086 (+) True G99704
TU118234 lncRNA downstream 329329 15055267 ~ 15058771 (+) True G99705
TU118304 lncRNA downstream 445394 15171332 ~ 15173435 (+) True G99766
TU118332 lncRNA downstream 450298 15176236 ~ 15180771 (+) True G99786
XM_026927058.2 mRNA upstream 16191 14695777 ~ 14709427 (+) True chka
XM_026927225.2 mRNA upstream 39140 14676544 ~ 14686478 (+) True kmt5b
XM_026927226.2 mRNA upstream 39140 14676544 ~ 14686478 (+) False kmt5b
XM_026927162.2 mRNA upstream 68481 14653915 ~ 14657137 (+) True arpin
XM_034305028.1 mRNA upstream 76651 14640960 ~ 14648967 (+) True fam169b
XM_034305422.1 mRNA downstream 59002 14784940 ~ 14877479 (+) True hydin
XM_034305421.1 mRNA downstream 59002 14784940 ~ 14813548 (+) False hydin
XM_026926983.2 mRNA downstream 159318 14885256 ~ 14969007 (+) False necab2
XM_026926982.2 mRNA downstream 159319 14885257 ~ 14969007 (+) True necab2
XM_026927201.2 mRNA downstream 405327 15131265 ~ 15170919 (+) True ranbp10
TU117779 other upstream 201138 14520801 ~ 14524480 (+) True G99341
XR_004578308.1 other upstream 684836 14035230 ~ 14040782 (+) False skor1b
TU117337 other upstream 936228 13785095 ~ 13789390 (+) False G98972
TU117309 other upstream 1009852 13691607 ~ 13715766 (+) True G98946
XR_004578350.1 other upstream 1870065 12837299 ~ 12855553 (+) False nlrc5
XR_004578337.1 other downstream 574544 15300482 ~ 15345968 (+) False carmil2
TU118902 other downstream 1623519 16349457 ~ 16349787 (+) True G100306
TU118951 other downstream 1874319 16600257 ~ 16601067 (+) True G100345
XR_004578324.1 other downstream 2674488 17400426 ~ 17443468 (+) False LOC117597546
XR_003403945.2 other downstream 2763608 17489546 ~ 17493092 (+) False LOC113539654

Expression Profile