RNA id: TU118481


Basic Information

Item Value
RNA id TU118481
length 1922
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G99915
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15297605 ~ 15299578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGgacaatattattttattagctgTACAGCAATACATTCTCCACGTTTTTCCTATTCCCTCAAAGCCCCACCCAGCCATaataaatgtctttatatgTTGGTTTTCTGACCACTGTAAAATTCACACAGTTACTGCTAggtacaaaaaaggaaaaagcatCAACCTAAAATTAAGAgcttaacaaaagaaaagaaatgtaaatgaaaaagtaCAAGTAGGGAAAACATTCTGAatctggaaattaaaaaaaaagttcagaaaatAACAGTCCTTCTAAATGTGAACTTTCTTATGAACTAACTCTATGCAAATAGTTCTTCCATAACAGAATGAATCAAAATGGCTTCATTAAGCTAAAGCTGTGTGGACTGTATGTGATCTGAACAAAAATGTGAGAAAGCTGCTATGGACAGAGACCTTTTTCTGATCTGTTATCATGTCAGCAGTCATACCCAATCGGAGAGTTAGGGCGTAGCCTGCACTAAGTTACAGGACTCAGTGCTCATCTAGCATTGGCCGACTTTCAATTTTCCCCACCTgtcctttttccttcctttacAGCGTCAGGATCTAAACCCTGGTCGCCCAGTTACATGTTACCACTACACCACTCAAGAGTTATGCTCACCTTTATAAGTCTCGAAACCAACATAGAAATGGGCTCTGACAGAAACAAGCTATAGGCTCTTATCTTCCTATCTTAAGCAATCATAAAGGAGAATATCTAATTCCCTCCCTGAAAAGCTGAAAACAAACCCAGGTGACATTAGAAGCTGTACAAGACCAAGGAAAAACAGATTGGGGCATTTACATGATATTATGCCATTACGCCCTTGTCAAGATTTAAAATTCTTAAGGAGCATGTTTTCAAATGACTactgtttaaaatgtcattgtGTCAGCATTCAATGTCATCAATTCACTTGAAAAggattaaaatgttcataataaaacaaaaataaaaaaacgtaTTTACACGCAAGACCTGCCAAGATTACTCTTCTTTTGTACAATGTTATCAACTTCAGATTTTTAGTTATTTCAAACGTGATGGATGGAAATCCTCCCAGACCATACAATTATATCTATATTCCTaagcttttctctctttcatcaaCTGTAATCAGTGAAAGCAATAAGAAATGCAACAGAGAATAAAAGTTGCCACATGTGTCAGATATTAAAAGTATATTTGTTGGGTAAAATGCCCATTCTACAACAGTGATAGAAAGTCTAAATATCAAGGCTTGACCAGGCCCACCAATTTTTACTTTTCAAATATTGCCATGGTAATGTAATAGATTGGAGGCTGAAAGAATATCGGCATGTTAATTAGGCAAAAACATCTAAAGGTGCGCAGTTCACTACAGTAAATATGAGGAACCAGCTACAGTCACCGGATTTGCACATAAGCATCTCTGCAACCCGTGCCACACACTAGATGGTATACATGGGACAATAATCAGACTAAtaactgaaaatgtaaaaaagcatCATGCACAGTTGACATCATGAGTCTAAAgcatgtaacaaaaaaaaaaaaaaaactaacaaaaaacaaaaaaacacaaattaaagtgAAGATTAAGAGTGAAAAAGGACCATTGGATATTTCATTCCACAGATCAGAAACTGAAGGAGAACACAGCAGAAAGGAGTTTGGCTGTGTTCTGTGAGGCAGGGAGAGCACATCACCGGTCCATCATACTGAGGATCATCTCAGGGGTGAGGTCTCCATTGGGTGCGGCCTCAGGGACAGAGAGCTGCTCTGCCTCCACTCCTCCCTCTGCTGCTTCAATCTCCTCCACCACAGGCTCTGCTGATGCTGACGCTGAAGAATCCACGCCGTCCTGCTCCTTCTTCACTATGATGTTCTCAATGGCTCCTGTGCCCTCATCCTCCACCTGGATAATGGCAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118350 lncRNA downstream 116693 15176175 ~ 15180912 (-) True G99801
TU118330 lncRNA downstream 124171 15171311 ~ 15173434 (-) True G99784
TU118318 lncRNA downstream 129179 15160203 ~ 15168426 (-) True G99775
TU118323 lncRNA downstream 147290 15149403 ~ 15150315 (-) True G99780
TU117973 lncRNA downstream 648612 14648078 ~ 14648993 (-) True G99493
TU118509 lncRNA upstream 17931 15317509 ~ 15317867 (-) True G99941
XR_003403500.2 lncRNA upstream 133817 15433395 ~ 15436916 (-) True LOC113534479
TU118600 lncRNA upstream 177923 15477501 ~ 15478166 (-) True G100023
TU118605 lncRNA upstream 183251 15482829 ~ 15483037 (-) True G100027
TU118606 lncRNA upstream 184425 15484003 ~ 15484301 (-) True G100028
XM_026927748.2 mRNA downstream 97357 15177211 ~ 15200248 (-) True pard6a
XM_026927199.2 mRNA downstream 165399 15121047 ~ 15132206 (-) False tsnaxip1
XM_026927200.2 mRNA downstream 167214 15121047 ~ 15130391 (-) True tsnaxip1
XM_026927495.2 mRNA downstream 177887 15105315 ~ 15119718 (-) True nutf2
XM_026927338.2 mRNA downstream 192495 15075874 ~ 15105110 (-) True edc4
XM_034305486.1 mRNA upstream 49070 15348648 ~ 15357563 (-) False tmem170a
XM_026927032.2 mRNA upstream 49070 15348648 ~ 15354663 (-) False tmem170a
XM_034305488.1 mRNA upstream 49070 15348648 ~ 15354192 (-) False tmem170a
XM_026927033.2 mRNA upstream 49070 15348648 ~ 15352739 (-) False tmem170a
XM_026927538.2 mRNA upstream 172051 15471629 ~ 15473015 (-) True LOC113534617
XR_003403523.2 other downstream 950597 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 1508758 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 1509406 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 1509819 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 1510403 13787134 ~ 13787202 (-) True LOC113534850
TU118530 other upstream 47588 15347166 ~ 15354637 (-) True tmem170a
XR_004578368.1 other upstream 2787077 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 2887869 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 4051184 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 4680491 19980069 ~ 19980259 (-) True LOC113527007

Expression Profile