RNA id: XM_034305486.1


Basic Information

Item Value
RNA id XM_034305486.1
length 1695
RNA type mRNA
GC content 0.43
exon number 3
gene id tmem170a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15347166 ~ 15357563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgcagataagattgaAGACTCCTGCCGTAtgtcacaggttcccaaccctgatccTGGAGTTCCCACTGGAGTCCTTTCTCTGCTCCCAACAttcctgattcaactaatcagctaataaGAGCCCTTCCggagttgaagtgggtgtgttagagcagagaaatcaaatgtgcaggacagaggGTACTCCAGGACATGGGCTGGGAACTTGTGCCCTACATTCACATTAGCGAGCAACAAGATGTGGTATGGCGTTTTCCTGTGGGCTGGAGTGTCCTCGCTGGTGTTCCACCTTCCCGCAGCTTTACTGGCCCTCGCCACTCTCCGGGGACATAAGATAGCACGCTTCTTTCCCCTCGCCATCATGCTCATGGCCATTATAGGTCCTCTGTTGGGAGGCGTGCTCACTAGTGCAGCCATAGCGGGGGTCTACATGGCAGCGGGGAAGAGGATGATCTCGTTGGAGGCTTTTGTGTTTGGAGTAGGACAGTCTTTCTGCGTTCTTGTCATCTCCTTCCTCAGAGTGTTGGCCACGCTGTAGCACTGAGCCACTGAGGACAGTGAGAGCTGTGGACTTGCTTCACTTCCCCTGGATGTTATATGCAAAAACACTGAGGCCTTATTTTCCACGTGTGTCCCCACAACTCTTATTTTCGTGCGCACATATAGCGCTGTTTTCCCTTAAAAGCTTTCGGGTGGACATTCGTTCTCCGTGATCGGCGGACAGATGTCTACTGGACAGGCTGTTTTTAAAATCCGAGCTGTCTTTCGTACACACGTTCTACGAAAAAGTCTTGCACATGAGCTTACTTATAAAGTATGCAGTCAAACATTACAGGGGAAAGCTACAAATGGCTGCAAACAGATCCTCAGAACAATATTGTTAGAATCCTCTAAACAAAATCTTACTTTCCCTGTGTTTTCAAGAGGTGTGTATCATCACCATGATCTCACGCCATTCTGATAACCTTCCACTTGCTTAGGTAGTGATGCTGGTCTTTGCAGTTACACAGATATGAGTCTTAATGTTATTTAACTTCATTCAACACAGTTAGACTAGTTTGAGTCTGTACACCCTGAAGTCCATTCCAGCTTCCTCATGTTCTAATTGTCTAAACATTTTACCTTCAGTTTACACTGAGCAAATAATTTTATACGCTAAATGATGTAGTTTAATGAGAAATTTAATGGCTATTTCTACTTTGCATATAGAgtactccatcacacactcttgCAATTATATTTGCAGTAAATGTtacacatttgcatttaaaatccAGCTTTATTTAACACATACATTCCTACAGTCAcgaagcactttattaggaacacatgtacatctaatcatttatgcaattatctaatcaaccaatcatgtggcagcagtgcaatgtataaaatcatgcagatacgggccagcatcTTGGGGTAATGTTCAAATAAactatcagaatggggaagaaatgtaagaaatgtaaactgctgatctcctgggattttttttttacacacagcaATCTCttgagtttgcacagaatggtgtgaaaaacaaacaaaacaaaatcctaTCAGCAGAGGGTCTACTCCTTGTTGAAGAGCGAGATCAGAGgtgtctgagctgacaggaaagttGAACTGGAAAGTTCAACCCaaactggaaagaaaaaaaaaaaatcacctggtcttcagctttcca

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118509 lncRNA downstream 30781 15317509 ~ 15317867 (-) True G99941
TU118481 lncRNA downstream 49070 15297605 ~ 15299578 (-) True G99915
TU118350 lncRNA downstream 167736 15176175 ~ 15180912 (-) True G99801
TU118330 lncRNA downstream 175214 15171311 ~ 15173434 (-) True G99784
TU118318 lncRNA downstream 180222 15160203 ~ 15168426 (-) True G99775
XR_003403500.2 lncRNA upstream 75832 15433395 ~ 15436916 (-) True LOC113534479
TU118600 lncRNA upstream 119938 15477501 ~ 15478166 (-) True G100023
TU118605 lncRNA upstream 125266 15482829 ~ 15483037 (-) True G100027
TU118606 lncRNA upstream 126440 15484003 ~ 15484301 (-) True G100028
TU118613 lncRNA upstream 189013 15546576 ~ 15548763 (-) True G100034
XM_026927748.2 mRNA downstream 148400 15177211 ~ 15200248 (-) True pard6a
XM_026927199.2 mRNA downstream 216442 15121047 ~ 15132206 (-) False tsnaxip1
XM_026927200.2 mRNA downstream 218257 15121047 ~ 15130391 (-) True tsnaxip1
XM_026927495.2 mRNA downstream 228930 15105315 ~ 15119718 (-) True nutf2
XM_026927338.2 mRNA downstream 243538 15075874 ~ 15105110 (-) True edc4
XM_026927538.2 mRNA upstream 114066 15471629 ~ 15473015 (-) True LOC113534617
XM_026927603.2 mRNA upstream 128450 15486013 ~ 15499252 (-) True hsf4
XM_026927326.2 mRNA upstream 717384 16074947 ~ 16083613 (-) False nr2f2
XM_026927325.2 mRNA upstream 717384 16074947 ~ 16080265 (-) False nr2f2
XM_026927324.2 mRNA upstream 717384 16074947 ~ 16080265 (-) True nr2f2
XR_003403523.2 other downstream 1001640 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 1559801 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 1560449 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 1560862 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 1561446 13787134 ~ 13787202 (-) True LOC113534850
XR_004578368.1 other upstream 2729092 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 2829884 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 3993199 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 4622506 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 5596039 20953602 ~ 20966910 (-) True G102566

Expression Profile